View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_48 (Length: 313)
Name: NF11453_low_48
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_48 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 31321614 - 31321895
Alignment:
| Q |
10 |
aggagcacagagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
109 |
Q |
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| T |
31321614 |
aggaacacacagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
31321713 |
T |
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| Q |
110 |
gcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
209 |
Q |
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| T |
31321714 |
gcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
31321813 |
T |
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| Q |
210 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgat |
291 |
Q |
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| T |
31321814 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgat |
31321895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 31333867 - 31334148
Alignment:
| Q |
10 |
aggagcacagagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
109 |
Q |
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| T |
31333867 |
aggaacacacagaagtggtggtcagagaattaagtgtaatgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
31333966 |
T |
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| Q |
110 |
gcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
209 |
Q |
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| T |
31333967 |
gcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
31334066 |
T |
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| Q |
210 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgat |
291 |
Q |
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| T |
31334067 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgat |
31334148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 39110404 - 39110548
Alignment:
| Q |
145 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
244 |
Q |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
245 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatg |
289 |
Q |
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| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatg |
39110548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 33521232 - 33521092
Alignment:
| Q |
130 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
229 |
Q |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
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| Q |
230 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgc |
270 |
Q |
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| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgc |
33521092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 2057 - 2010
Alignment:
| Q |
10 |
aggagcacagagaagtgatggtcagagaattaagtgtaatgagaacac |
57 |
Q |
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| T |
2057 |
aggaacacacagaagtggtggtcagagaattaagtgtaatgagaacac |
2010 |
T |
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