View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_50 (Length: 307)
Name: NF11453_low_50
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 3014074 - 3013781
Alignment:
| Q |
1 |
caggaaaatgtgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaac |
100 |
Q |
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| T |
3014074 |
caggaaaatgtgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaac |
3013975 |
T |
|
| Q |
101 |
aggtttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3013974 |
aggtttccgattactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaa |
3013875 |
T |
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| Q |
201 |
aattcaaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
294 |
Q |
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| T |
3013874 |
aattcgaacatgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
3013781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 182337 - 182276
Alignment:
| Q |
33 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgca |
94 |
Q |
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| T |
182337 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatgatgca |
182276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 40672663 - 40672775
Alignment:
| Q |
36 |
ttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggtttccgattact------cggtggcttaacag |
129 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||||||| |
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| T |
40672663 |
ttacctcgaatacaaccgagaagcatggttttgccagtgtatgcatcacctatgatgcaggaaacaggtttccgataactaggcggcggcggcttaacag |
40672762 |
T |
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| Q |
130 |
tatcacctggaaa |
142 |
Q |
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||||||||||||| |
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| T |
40672763 |
tatcacctggaaa |
40672775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 40672796 - 40672856
Alignment:
| Q |
231 |
caaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
294 |
Q |
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| T |
40672796 |
caaaattcaagcataa---taataatcaatcgattttagttatcattaccttcattcatcttct |
40672856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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