View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_54 (Length: 294)
Name: NF11453_low_54
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 40603201 - 40603119
Alignment:
| Q |
1 |
tcaaggtttcaaacgccacccaaatatgaacaacttttgagctagaaaaatgtgatggtggctctcaccgtgcatggaaagtg |
83 |
Q |
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| T |
40603201 |
tcaaagtttcaaacgccacccaaatatgaacaacttttgagctagaaaaatgtgatggtggctctcaccgtgcatggaaagtg |
40603119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 40603129 - 40603087
Alignment:
| Q |
103 |
catgaaaagtgacggtggctttcatcgttggataataaaatac |
145 |
Q |
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| T |
40603129 |
catggaaagtgacggtggctttcatcgttggataataaaatac |
40603087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 40603010 - 40602978
Alignment:
| Q |
217 |
ccaccaaaccctatgaatatcattatatttaca |
249 |
Q |
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| T |
40603010 |
ccaccaaactctatgaatatcattatatttaca |
40602978 |
T |
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