View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_68 (Length: 257)
Name: NF11453_low_68
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40820239 - 40820000
Alignment:
| Q |
1 |
agaaatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40820239 |
agaaatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcat |
40820140 |
T |
|
| Q |
101 |
ggaactggtggaaattggatttctcttcctcaaaaagctggtaagaactcttggtatttcatgaaaaatgcttgatcaagttatataattgttatatagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40820139 |
ggaactggtggaaattggatttctcttcctcaaaaagctggtaagaattcttggtatttcatgaaaaatgcttgatgaagttatataattgttatatagt |
40820040 |
T |
|
| Q |
201 |
tttaaacctaacaaatctcatgttatatatatctttttag |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40820039 |
tttaaacctaacaaatctcatgttatatatatctttttag |
40820000 |
T |
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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 21173502 - 21173641
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa |
104 |
Q |
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|||||||||||||| || ||||||||| ||| ||| |||| ||| || |||||||||||||||||| ||||||| ||||| || ||||| || ||||| | |
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| T |
21173502 |
atgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagattcaaagcttaaagattacatagagaaacatggca |
21173601 |
T |
|
| Q |
105 |
ctggtggaaattggatttctcttcctcaaaaagctggtaa |
144 |
Q |
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| T |
21173602 |
ctggtggaaattggatttctcttcctcataaagctggtaa |
21173641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 53557002 - 53557133
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa |
104 |
Q |
| |
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||||| |||||||| ||||||||||| || || |||||||||||||| ||||| || ||||||||| | | |||||| || || |||| |||||| |
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| T |
53557002 |
atgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa |
53557101 |
T |
|
| Q |
105 |
ctggtggaaattggatttctcttcctcaaaaa |
136 |
Q |
| |
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|||| |||||||||||| |||||||||||||| |
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| T |
53557102 |
ctggaggaaattggattgctcttcctcaaaaa |
53557133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 40254681 - 40254617
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaaga |
69 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| |||| ||| || |||||||| |||||||| |
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| T |
40254681 |
atggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaaga |
40254617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 41208916 - 41208793
Alignment:
| Q |
3 |
aaatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatgg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |||||||| || ||||| || ||||||||| |||| || || || || ||||| || ||||| |
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| T |
41208916 |
aaatgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaacatgg |
41208817 |
T |
|
| Q |
103 |
aactggtggaaattggatttctct |
126 |
Q |
| |
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|||||| ||||| |||||| |||| |
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| T |
41208816 |
aactggaggaaactggattactct |
41208793 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 47847116 - 47847051
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagat |
70 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
47847116 |
atgggaagggcaccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagat |
47847051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 5113168 - 5113295
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| ||||||||| | || ||||| || |||||| | |||| | |
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| T |
5113168 |
atgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggta |
5113267 |
T |
|
| Q |
105 |
ctggtggaaattggatttctcttcctca |
132 |
Q |
| |
|
||||||||||||||||| |||| ||||| |
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|
| T |
5113268 |
ctggtggaaattggattgctctacctca |
5113295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 4685350 - 4685481
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa |
104 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||||||| | || |||||| || |||||| | ||||| | |
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| T |
4685350 |
atgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggta |
4685449 |
T |
|
| Q |
105 |
ctggtggaaattggatttctcttcctcaaaaa |
136 |
Q |
| |
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||||||| || |||||| |||| || |||||| |
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|
| T |
4685450 |
ctggtggtaactggattgctctcccacaaaaa |
4685481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 4612088 - 4612023
Alignment:
| Q |
5 |
atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagat |
70 |
Q |
| |
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||||||||||||||||| |||||||||| ||| || |||| |||||| ||||| || || |||||| |
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| T |
4612088 |
atgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat |
4612023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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