View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_69 (Length: 252)

Name: NF11453_low_69
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_69
NF11453_low_69
[»] chr2 (12 HSPs)
chr2 (17-252)||(11149186-11149419)
chr2 (17-215)||(11145252-11145450)
chr2 (17-186)||(11136953-11137122)
chr2 (17-175)||(11104106-11104264)
chr2 (86-190)||(11171246-11171350)
chr2 (16-187)||(11155568-11155739)
chr2 (93-213)||(11177259-11177379)
chr2 (17-175)||(11095647-11095805)
chr2 (17-175)||(11110101-11110259)
chr2 (17-174)||(11118105-11118262)
chr2 (93-187)||(10794016-10794110)
chr2 (56-124)||(11191955-11192023)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11149186 - 11149419
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11149186 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttgtgaatc 11149285  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaattatcatctacactggtatatatata 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  11149286 aaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattcttgccctttctgctgaattatcatctacactgg--tatatata 11149383  T
Q  217 tgcctcaaactgtactatatatttttctcatttacc 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  11149384 tgcctcaaactgtactatatatttttctcatttacc 11149419  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 11145252 - 11145450
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| || |||| |||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11145252 tgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttgtgaatc 11145351  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaattatcatctacactggtatatatat 215  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  11145352 aaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgctgaattatcatctacactggtatatatat 11145450  T

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Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 11136953 - 11137122
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| |  |||||  || |||||||||||||||||||||    
T  11136953 tgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaatc 11137052  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgc 186  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11137053 aaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattcttgccctttctgc 11137122  T

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Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11104106 - 11104264
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    ||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||     
T  11104106 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaata 11104205  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||||| || ||| |    ||||||||||| |||||||||||||||||||||    
T  11104206 aaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 11104264  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 11171246 - 11171350
Alignment:
Q  86 aactcattaagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctg 185  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||| ||| |||    
T  11171246 aactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 11171345  T
Q  186 ctgaa 190  Q
    |||||    
T  11171346 ctgaa 11171350  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 11155568 - 11155739
Alignment:
Q  16 atgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaat 115  Q
    ||||||||| || |||||  ||||||| |||| |||  | || || |||||| | ||||||||||| |  ||||| |||||||||||||||||||| |||    
T  11155568 atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgtaaat 11155667  T
Q  116 caaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgct 187  Q
    || |||||||| ||| | ||||   ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  11155668 cagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgct 11155739  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 11177259 - 11177379
Alignment:
Q  93 taagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaatt 192  Q
    ||||||||||||| ||  | || || ||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  11177259 taagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgccctttctgctgaaat 11177358  T
Q  193 atcatctacactggtatatat 213  Q
    ||| |||   |||||||||||    
T  11177359 atcttctgatctggtatatat 11177379  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11095647 - 11095805
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    ||||||| |||||||||  ||||||| ||| ||||| | || ||||| ||||||||  ||||||||| |||||||||||| |||||||||||||| || |    
T  11095647 tgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgttgtaaacc 11095746  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||||| || |||||    |||||   ||| |||||||||||||||||||||    
T  11095747 aaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattctt 11095805  T

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Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11110101 - 11110259
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| || || |  ||  |||||||||||||||||||||||||||| |  ||||| |||||||| ||||||||| | ||||    
T  11110101 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc 11110200  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||    ||||||||  |||| ||||| | ||||||||||||||||||||||    
T  11110201 aaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt 11110259  T

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Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 11118105 - 11118262
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| ||||||  |||  ||| ||||||||||||||||  |||||| | |||||| |||||| | ||||||||| | ||||    
T  11118105 tgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgttatcaatc 11118204  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattct 174  Q
    | || ||||| |  ||||||||   ||||||||| | |||||||||||||||||||||    
T  11118205 agattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 11118262  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 10794110 - 10794016
Alignment:
Q  93 taagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgct 187  Q
    ||||||||||| | ||||||||||  ||||| ||||  ||||||||  |||| ||||| |||||||||||||||||||||||||| ||| |||||    
T  10794110 taagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgct 10794016  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 11192023 - 11191955
Alignment:
Q  56 gtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatcaaatcaaa 124  Q
    |||||||| ||||  ||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  11192023 gtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaa 11191955  T

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