View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_70 (Length: 251)
Name: NF11453_low_70
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30001937 - 30001704
Alignment:
| Q |
1 |
tatataaaaaggatttaagcagagagggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtg |
100 |
Q |
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| T |
30001937 |
tatataaaaaggatttaa--agagagggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtg |
30001840 |
T |
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| Q |
101 |
tctcaaacccacatatttaagtgacatcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattac |
200 |
Q |
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| T |
30001839 |
tctcaaacccacatatttaaatgacatcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattac |
30001740 |
T |
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| Q |
201 |
ctcatgttccacatttacaagccaccttgtttttgt |
236 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
30001739 |
ctcatgatccacatttacaagccaccttgtttttgt |
30001704 |
T |
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