View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_76 (Length: 243)
Name: NF11453_low_76
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29660663 - 29660440
Alignment:
| Q |
1 |
catatgttactacattcaatgaaaattagaggacatgactaatcctaattcccaggctgaatcccttattaacagggcactattgttaaacatgacagac |
100 |
Q |
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| T |
29660663 |
catatgttactacattcaatgaagattagaggacatgactaatcctaattcccaggctgaatcccttattaactgggcactattgttaaacatgacagac |
29660564 |
T |
|
| Q |
101 |
aaccaatgaatatgaactgaatctgattatggaactgcatacatcatcataatcaatgaaaataaaagctattaagctaaacattttgaatgaaaatatt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29660563 |
aaccaatgaatttgaactgaatctgattatggaactgcatacatcatcataatcaatgaaaataaaagctattaagctagacattttgaatgaaaatatt |
29660464 |
T |
|
| Q |
201 |
ttgtcaaaaataagatacctttaa |
224 |
Q |
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|||| ||||||||||||||||||| |
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| T |
29660463 |
ttgttaaaaataagatacctttaa |
29660440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 33186465 - 33186552
Alignment:
| Q |
10 |
ctacattcaatgaaaattagaggacatgactaatcctaattcccaggctgaatcccttattaacag-ggcactattgttaaacatgacagaca |
101 |
Q |
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||||||||||| |||||| ||||||| ||||| ||| || |||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
33186465 |
ctacattcaataaaaattggaggaca-----aatccgaatgccgaggctgaagcccttattaacagtggccctattgttaaacatgacagaca |
33186552 |
T |
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