View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_84 (Length: 240)
Name: NF11453_low_84
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 46651439 - 46651281
Alignment:
| Q |
16 |
ctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtttgggatc |
115 |
Q |
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| T |
46651439 |
ctaatcatgcagttgttcctattaaaaggagaagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtttgggatc |
46651340 |
T |
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| Q |
116 |
agacaaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttgtg |
174 |
Q |
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| T |
46651339 |
agacaaactaagattctctcagtcttctagctttctcgttgccaacaaaaatgtttgtg |
46651281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 46173482 - 46173327
Alignment:
| Q |
19 |
atcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtttgggatcaga |
118 |
Q |
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| T |
46173482 |
atcatgcagttgttcctattaaaaggaggagattgactgattgtgccaaggaagagaaaagctgcatcattgagaattcttcaggaggtctgggatcaga |
46173383 |
T |
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| Q |
119 |
caaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttgtg |
174 |
Q |
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| T |
46173382 |
taaactacgaatttctcgatcttctagctttcgagttgccaacccaaatgtttgtg |
46173327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 46642307 - 46642151
Alignment:
| Q |
16 |
ctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtttgggatc |
115 |
Q |
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| T |
46642307 |
ctaatcatgcagctgttcctattaaaaggaggagattaactgcttgtgtcaaggcagaaaaaagccacatcactgagaattcttcagtaggtttgggatc |
46642208 |
T |
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| Q |
116 |
agacaaactaagattctctcggtcttctagctttctcgttgccagcaaaaatgtttg |
172 |
Q |
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| T |
46642207 |
ggataaactgggattctctcattcttctagctttcaagatgccaaccaaaatgtttg |
46642151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 46651226 - 46651162
Alignment:
| Q |
172 |
gtgtggaagagaataaagataagagcatttgcaacggaaattatcaatatacatgtggttattct |
236 |
Q |
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| T |
46651226 |
gtgtggaagagaataaagaaaagagcatttgcaacggcaattatcaatatacatatgattattct |
46651162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 46619775 - 46619868
Alignment:
| Q |
16 |
ctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggttt |
109 |
Q |
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| T |
46619775 |
ctaatcatgcagccgttcctattaaacggaggaaattgactgcttgtgccaaatcagagaaaagtcgcattgttgagaattcttcaggatgttt |
46619868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 46638493 - 46638586
Alignment:
| Q |
16 |
ctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggttt |
109 |
Q |
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| T |
46638493 |
ctaatcatgcagccgttcctattaaacggaggaaattgactgcttgtgtcaaatcagagaaaagccgcattgttgagaattcttcaggatgttt |
46638586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 15768668 - 15768539
Alignment:
| Q |
16 |
ctaatcatgcagctgttcctattaaaatgaggagattgactgcttgtgccaaggcagagaaaagctgcataactgagaattcttcaggaggtttgggatc |
115 |
Q |
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||||| || ||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
15768668 |
ctaataatacagttgttcctattaaaaggagaagattgactgcttgtgccaaggaagagaaaagccgcattgttgagaattcttcaggaggtttgggatc |
15768569 |
T |
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| Q |
116 |
agacaaactaagattctctcggtcttctag |
145 |
Q |
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| T |
15768568 |
agataatcttggattttctccgtcttctag |
15768539 |
T |
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