View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_9 (Length: 546)
Name: NF11453_low_9
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_9 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 225 - 517
Target Start/End: Complemental strand, 7692791 - 7692497
Alignment:
| Q |
225 |
ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg |
324 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7692791 |
ttcacaacttattacatgtgaaaaatgaaaaggattgtgttgtctgtgttgataataatggaagaagtagaagaagaaagagttgagatttgtggagctg |
7692692 |
T |
|
| Q |
325 |
attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa |
424 |
Q |
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||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
7692691 |
attgaggaaaagctctcgatcgggaggaattgtggtggactactagttccagcaggagatgtgatgtgtgtatgctgatgtgcaatgactatggtcataa |
7692592 |
T |
|
| Q |
425 |
agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaattgagagaga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7692591 |
agtagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagaga |
7692497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 225 - 537
Target Start/End: Original strand, 10016745 - 10017060
Alignment:
| Q |
225 |
ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg |
324 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10016745 |
ttcacaacttgttacatgtgaaaaatgaaaaggattgtgttgtatgaattgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctt |
10016844 |
T |
|
| Q |
325 |
attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
10016845 |
attgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatgtgatatgtgtattctgatgtgcaatgactatggtcataa |
10016944 |
T |
|
| Q |
425 |
agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagacaa |
520 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
10016945 |
aatagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaa |
10017044 |
T |
|
| Q |
521 |
caccgtcttccctatgc |
537 |
Q |
| |
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|| |||||||||||||| |
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| T |
10017045 |
ca-cgtcttccctatgc |
10017060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 225 - 537
Target Start/End: Complemental strand, 26415008 - 26414693
Alignment:
| Q |
225 |
ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | |||||||||||||||||| |
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| T |
26415008 |
ttcacaacttattacatgtgaaaaatgaaaaggattgtgttgtctgtgttgataataaaggaagaaatagaagatgaaatatttgagatttgtggagctg |
26414909 |
T |
|
| Q |
325 |
attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtgcaatgactatgatcataa |
424 |
Q |
| |
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|||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
26414908 |
attgaggaaaagctctcgttccgaaggaattgtggtgtactagtagttccagcaggagatatgatgtgtgtatgctgatgtgcaatgactatggtcataa |
26414809 |
T |
|
| Q |
425 |
agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagacaa |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
26414808 |
agtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaa |
26414709 |
T |
|
| Q |
521 |
caccgtcttccctatgc |
537 |
Q |
| |
|
|| |||||||||||||| |
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| T |
26414708 |
ca-cgtcttccctatgc |
26414693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 225 - 537
Target Start/End: Original strand, 8122 - 8438
Alignment:
| Q |
225 |
ttcacagcttattacatgtgaaaaatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg |
324 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8122 |
ttcacaacttgttacatgtgaaaaatgaaaaggattgtgttgtatgaattgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctt |
8221 |
T |
|
| Q |
325 |
attgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagat-gtgaggtgtgtatgctgatgtgcaatgactatgatcata |
423 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||| ||||| |
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| T |
8222 |
attgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatggtgatatgtgtattctgatgtgcaatgactatggtcata |
8321 |
T |
|
| Q |
424 |
aagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaagacaatt--gagagagaca |
519 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
8322 |
aaatagtgatttgaaaatataaaatattaaaaatagatataaattaattccttgaaattgaatagtttttgagagttccaagacaattgagagagagaca |
8421 |
T |
|
| Q |
520 |
acaccgtcttccctatgc |
537 |
Q |
| |
|
||| |||||||||||||| |
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| T |
8422 |
aca-cgtcttccctatgc |
8438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 148 - 324
Target Start/End: Original strand, 13855001 - 13855176
Alignment:
| Q |
148 |
aacaaaatctggtacaaaaattacaatnnnnnnnnncggaataacagtgaggaagaaaggttttggatttgtaggtattcacagcttattacatgtgaaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
13855001 |
aacaaaatctggtacaaaaattacaa-aaaaaaaaacggaataacagtgaggaagaaaggttttggatttgtaggtattcacagcttatgacatgtgaaa |
13855099 |
T |
|
| Q |
248 |
aatgaaaaggattgtgttgtctttgttgataataaaggaagaagtagaagaagaaagagttgagatttgtggagctg |
324 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13855100 |
aatgaaaaggattgtgttgtctgtgttgataataaaggaagaagtagaagaagaaagagttcagatttgtggagctg |
13855176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 384 - 537
Target Start/End: Original strand, 13855175 - 13855331
Alignment:
| Q |
384 |
tgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattg |
483 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13855175 |
tgtgatgtgtgtatgctgatgtgcaatgactatggtcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttggaattg |
13855274 |
T |
|
| Q |
484 |
aatagttttt--gagttccaagacaatt--gagagagacaacaccgtcttccctatgc |
537 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
13855275 |
aatagtttttgagagttccaagacaattgagagagagacaaca-cgtcttccctatgc |
13855331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 1219735 - 1219586
Alignment:
| Q |
20 |
gcaacgatagaattggaggtgatattggaaggagcggcaacatgatta------------------caggggtcactataagtgttggcccttcagtagc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1219735 |
gcaacgatagaattggaggtgatattggaaggagcggcaacatgattagagttcctcaaagtgagacaggggtcactataagtgttggcccttcagtagc |
1219636 |
T |
|
| Q |
102 |
tgaatgtgaggatcgatttattactaccgcctc--agagtcctgagttaa |
149 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1219635 |
tgaatgtgaggatcgattaattactaccgcctcagagagtcctgagttaa |
1219586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 10474248 - 10474187
Alignment:
| Q |
383 |
atgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatata |
444 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
10474248 |
atgtgatgtgtgtatgctgatgtgcaatgactatggttataaagtagtgatttgaaaatata |
10474187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 10474317 - 10474253
Alignment:
| Q |
295 |
aagaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggt |
360 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| || || |||||||| |||||||||| |
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| T |
10474317 |
aagaagaaagagtt-agatttgtggagctgattgaggaacagttcctgatctgaaggaattgtggt |
10474253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 2004926 - 2004986
Alignment:
| Q |
67 |
acaggggtcactataagtgttggcccttcagtagctgaatgtgaggatcgatttattacta |
127 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2004926 |
acaggggccactgtaagtgttggtccttcagtagctgaatgtgaggatcgattaattacta |
2004986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 5977057 - 5976999
Alignment:
| Q |
278 |
aataaaggaagaagtagaagaagaaagagttgagatttgtggagctgattgaggaaaag |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| | ||||||||| |||||||||| |
|
|
| T |
5977057 |
aataaaggaagaaatagaagaagaaagagtttagatctatggagctgagtgaggaaaag |
5976999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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