View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_92 (Length: 231)
Name: NF11453_low_92
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 26722795 - 26723007
Alignment:
| Q |
1 |
atgatgttatcttttgatttttgttaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttga |
100 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26722795 |
atgaagttatcttttgatttttggtaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttga |
26722894 |
T |
|
| Q |
101 |
agatgttggcatatgagggattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgacgattacggcaacaggtgtaggattgcata |
200 |
Q |
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| T |
26722895 |
agatgttggcatat----gattttgtcaatcaatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcata |
26722990 |
T |
|
| Q |
201 |
cttatttatgcatcaag |
217 |
Q |
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||||||||||||||||| |
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| T |
26722991 |
cttatttatgcatcaag |
26723007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 26837845 - 26837708
Alignment:
| Q |
2 |
tgatgttatcttttgatttttgttaagttaatttatgaacaaatatataaatattttggtgcatacgatgcatatacttaagatctaatttatttttgaa |
101 |
Q |
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||||||||||||| ||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
26837845 |
tgatgttatctttgaatttttgatgagctaattcataaacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaa |
26837746 |
T |
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| Q |
102 |
gatgttggcatatgagggattttgtcaatcaatcttgg |
139 |
Q |
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||||||||| |||||||||||||||| ||||| ||||| |
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| T |
26837745 |
gatgttggcttatgagggattttgtccatcaaacttgg |
26837708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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