View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_96 (Length: 222)
Name: NF11453_low_96
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_96 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40603423 - 40603202
Alignment:
| Q |
1 |
aaaacaattcaaatcccacgtgcataaagataaagtcaaattagagttttacaaagaataatatcatcatcttataaaccgatttgtaaggatgagtttg |
100 |
Q |
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| T |
40603423 |
aaaacaattcaaatctcacgtgtataaagataaagtcaaattaaggttttacaaagaataacatcatcatcttataaaccgatttgtaaggatgagtttg |
40603324 |
T |
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| Q |
101 |
actcaatataaacaatctaataaaatataagaaataacaatttgatttaacaccaaattgaatattgatacatgaaaacaaaagagtataacggattatt |
200 |
Q |
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| T |
40603323 |
actcaatataaagaatctaataaaatataagaaataacaatttgatttaacaccaaattgaatattgatacatgaaaacaaaagagtataacggattatt |
40603224 |
T |
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| Q |
201 |
tatgttccactctatccacaat |
222 |
Q |
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| T |
40603223 |
tatgttccactctatccacaat |
40603202 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 11352588 - 11352548
Alignment:
| Q |
72 |
ttataaaccgatttgtaaggatgagtttgactcaatataaa |
112 |
Q |
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| T |
11352588 |
ttataaaccgatttgtaagtatgagtttgacctaatataaa |
11352548 |
T |
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