View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11454_high_2 (Length: 370)

Name: NF11454_high_2
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11454_high_2
NF11454_high_2
[»] chr4 (5 HSPs)
chr4 (1-370)||(23666529-23666898)
chr4 (63-224)||(12240600-12240761)
chr4 (63-224)||(49620617-49620778)
chr4 (62-165)||(24851008-24851111)
chr4 (141-223)||(14625565-14625647)
[»] chr3 (1 HSPs)
chr3 (63-264)||(45903310-45903511)
[»] chr6 (3 HSPs)
chr6 (63-268)||(26377799-26378004)
chr6 (63-242)||(23594525-23594704)
chr6 (63-222)||(14277217-14277376)
[»] chr1 (7 HSPs)
chr1 (63-264)||(19595974-19596175)
chr1 (63-242)||(32495730-32495909)
chr1 (63-242)||(46336327-46336506)
chr1 (59-266)||(43997153-43997360)
chr1 (106-268)||(43632837-43632999)
chr1 (59-187)||(11692531-11692660)
chr1 (59-100)||(19887033-19887074)
[»] chr7 (7 HSPs)
chr7 (59-224)||(41985279-41985444)
chr7 (81-242)||(14792361-14792522)
chr7 (63-225)||(4926107-4926269)
chr7 (62-223)||(7260257-7260418)
chr7 (74-225)||(19680972-19681123)
chr7 (59-164)||(1264952-1265058)
chr7 (164-213)||(1262040-1262089)
[»] chr5 (3 HSPs)
chr5 (63-223)||(39305464-39305624)
chr5 (81-225)||(17539996-17540140)
chr5 (74-222)||(9625448-9625596)
[»] chr8 (3 HSPs)
chr8 (59-268)||(13083592-13083802)
chr8 (116-223)||(32612371-32612479)
chr8 (65-188)||(41388878-41389002)
[»] scaffold1603 (1 HSPs)
scaffold1603 (59-225)||(914-1080)
[»] chr2 (3 HSPs)
chr2 (63-264)||(38992702-38992903)
chr2 (62-114)||(26692004-26692056)
chr2 (59-142)||(26691909-26691990)
[»] scaffold0027 (1 HSPs)
scaffold0027 (59-223)||(21890-22051)
[»] scaffold0005 (1 HSPs)
scaffold0005 (141-223)||(191736-191818)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 23666529 - 23666898
Alignment:
Q  1 tttgataatccatatcggttgcacactaaagcagccatcatcatgtttcaatgtttctatctggatttgctgctgtagcaaattcacacagtttgccgca 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23666529 tttgataatccatatcggttgcacactaaagcagctatcatcatgtttcaatgtttctatctggatttgctgctgtagcaaattcacacagtttgccgta 23666628  T
Q  101 tgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacacaatgtcagatcttgactgttcacttcaa 200  Q
     ||||||||||||||||||||||||| |||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23666629 ggagaaaatctcagtcatcaatccataatccgacggttccaattcgcaacacggatttcaacaatttcacacaatgtcagatcttgaccgttcacttcaa 23666728  T
Q  201 atcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcctcatccgaagataaggggtatgattgaattatgataaac 300  Q
    |||||||||||||||||| |||||||||  |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23666729 atcagacggtgcaaaacaactacagtggacaactgcctgtaatatttacagcaggaaatcctcatccgaagataaggggtatgattgaattatgataaac 23666828  T
Q  301 aacttttgaaaggaccaatgtaacctttcaagaacgaataaagcaacacagacaaaagctatctctcctc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23666829 aacttttgaaaggaccaatgtaacctttcaagaacgaataaagcaacacagacaaaagctatctctcctc 23666898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 12240761 - 12240600
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| || | ||||||||    
T  12240761 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcataaatttcaac 12240662  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctaca 224  Q
    ||||||||||||||||||||||| |  |||||||||| ||||||||||| | ||||||||||    
T  12240661 aatttcacacaatgtcagatcttaatcgttcacttcagatcagacggtgtagaacagctaca 12240600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 49620778 - 49620617
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||| |||||||||||||||||| |||||||||||  || ||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  49620778 ggatttgttgctgtagcaaattcacatagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaac 49620679  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctaca 224  Q
    ||||||||||||||||||||||| ||  ||||||||| ||||||||||| | |||| |||||    
T  49620678 aatttcacacaatgtcagatcttaacgtttcacttcagatcagacggtgtagaacaactaca 49620617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 24851111 - 24851008
Alignment:
Q  62 tggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaa 161  Q
    ||||||||||||||||||||||||||||||||| |||||  || ||||||||  ||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  24851111 tggatttgctgctgtagcaaattcacacagttttccgcagtagtaaatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaa 24851012  T
Q  162 caat 165  Q
    ||||    
T  24851011 caat 24851008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 14625647 - 14625565
Alignment:
Q  141 aatttacatcacagatttcaacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctac 223  Q
    |||||||| ||  ||||||||||||||||| || ||||||||||||||   |||||| | ||| |||||||||||||| ||||    
T  14625647 aatttacaacatggatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtgcaaaacacctac 14625565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 45903511 - 45903310
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  45903511 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 45903412  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcct 262  Q
    ||||| ||||||||||||||||| || |||||||||| ||||||||||| | ||||||||||| | | |||||| |||||   |||| | ||||||||||    
T  45903411 aattttacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcct 45903312  T
Q  263 ca 264  Q
    ||    
T  45903311 ca 45903310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 26378004 - 26377799
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||| || |||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  26378004 ggatttgttgttgtagcaaattcacacagtttgccgcagtagcaaatctcagtcatcaatccatgatctgacggttccaattcacagcacaaatttcaac 26377905  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcct 262  Q
    ||||||||||||||||||||||| ||  ||||||||| ||||||||||| | ||||||||||| | | |||||| |||||   |||| | ||||||||||    
T  26377904 aatttcacacaatgtcagatcttaaccattcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcct 26377805  T
Q  263 catccg 268  Q
    ||||||    
T  26377804 catccg 26377799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 23594525 - 23594704
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  23594525 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaaatttcaac 23594624  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaa 242  Q
    ||||||||||||||||| ||||| || |||||||||| ||||||||||| | ||||||||||| | | |||||| |||||    
T  23594625 aatttcacacaatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaa 23594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 14277217 - 14277376
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| | ||||| ||||||| |||| |||||||| ||| |||  ||||||||    
T  14277217 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccgtcaattcatgatctgacgattccaattcacagcacgaatttcaac 14277316  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagcta 222  Q
    ||||| ||||||||||||||||| || |||||||||| ||||||||||| | ||||||||    
T  14277317 aatttaacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagcta 14277376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 19595974 - 19596175
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    |||||||||| |||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  19595974 ggatttgctgttgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaac 19596073  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcct 262  Q
    ||||| ||||||| ||||||||| || |||||||||| ||||||||||| | ||||||||||| | |||||||| |||||   |||| | ||||||||||    
T  19596074 aattttacacaatatcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgtaactgcgtgtaaatattacagcaggaaatcct 19596173  T
Q  263 ca 264  Q
    ||    
T  19596174 ca 19596175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 32495730 - 32495909
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| |||| |||||||     
T  32495730 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacacaaatttcaat 32495829  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaa 242  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| | ||||||||||| | | |||||| |||||    
T  32495830 aatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaa 32495909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 46336506 - 46336327
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||  ||||||||||||| ||| |||| |||||||     
T  46336506 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatttgacggttccaattcacagcacaaatttcaat 46336407  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaa 242  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| | |||| |||||| | | |||||| |||||    
T  46336406 aatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaa 46336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 266
Target Start/End: Original strand, 43997153 - 43997360
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagattt 158  Q
    ||||||||||||||||||||||||||||||||||||  ||||   | ||||||||| ||||||| ||||||| ||||||| ||||| ||| |||| ||||    
T  43997153 atctggatttgctgctgtagcaaattcacacagtttatcgcagttgcaaatctcagccatcaattcatgatctgacggtttcaattcacagcacatattt 43997252  T
Q  159 caacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaa 258  Q
    ||||||||||||||||| ||||||| | || ||||| |||| |||||||||||||||||| ||||||     |||||| |||||||||||| | || |||    
T  43997253 caacaatttcacacaatatcagatcataaccgttcatttcagatcagacggtgcaaaacaactacagcctacaactgcgtgtaatatttacagcagaaaa 43997352  T
Q  259 tcctcatc 266  Q
    ||||||||    
T  43997353 tcctcatc 43997360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 43632999 - 43632837
Alignment:
Q  106 aaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacacaatgtcagatcttgactgttcacttcaaatcag 205  Q
    ||||||||  ||||||||||||||| ||||||||||||| ||| |||  | ||||||||||||||||||||||||||||| || ||||| || |||||||    
T  43632999 aaatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaatttcacacaatgtcagatcttaaccgttcattttaaatcag 43632900  T
Q  206 acggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcctcatccg 268  Q
    | |||||| |||| |||||| | | |||||| |||||||||||| | || |||||||||||||    
T  43632899 atggtgcagaacaactacagcgtgcaactgcgtgtaatatttacagcagaaaatcctcatccg 43632837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 11692660 - 11692531
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccga-cggttccaatttacatcacagatt 157  Q
    |||||||| ||||| |||||||||||||| |||||||| | |  |||||||||||| ||||||||||| | | || || ||| |||| |||  || ||||    
T  11692660 atctggatatgctggtgtagcaaattcacgcagtttgctgtagtagaaaatctcagccatcaatccataacctgatcgtttcaaattcacaataccgatt 11692561  T
Q  158 tcaacaatttcacacaatgtcagatcttga 187  Q
    |||||||||||||||||| |||||| ||||    
T  11692560 tcaacaatttcacacaatatcagattttga 11692531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 19887074 - 19887033
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgca 100  Q
    |||||||||| ||| |||||||||||||||||||||||||||    
T  19887074 atctggatttactgttgtagcaaattcacacagtttgccgca 19887033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 41985444 - 41985279
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagattt 158  Q
    ||||||||||||||| |||||||||||||||| |||| ||||  || ||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||    
T  41985444 atctggatttgctgccgtagcaaattcacacaatttgtcgcagtagcaaatctcagccatcaatccatgatccgacggttccaattcacaacacggattt 41985345  T
Q  159 caacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctaca 224  Q
    ||||||||||| |||||||||||||||||| | |||||||| |||| |||||||| ||||||||||    
T  41985344 caacaatttcatacaatgtcagatcttgaccgctcacttcagatcaaacggtgcagaacagctaca 41985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 14792361 - 14792522
Alignment:
Q  81 aattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacacaatgtcag 180  Q
    ||||||||||||||||||||  || ||||||||| |||||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  14792361 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaatttcacacaatgtcag 14792460  T
Q  181 atcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaa 242  Q
    ||||| || |||||||||| ||||||||||| | ||||||||||| | | |||||| |||||    
T  14792461 atcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaa 14792522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 4926107 - 4926269
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    |||||||||||||||||||||||||||||||||| ||   || ||||||||| |||||||||||||||  ||||||| ||||   | |||| ||||||||    
T  4926107 ggatttgctgctgtagcaaattcacacagtttgctgctgtagcaaatctcagccatcaatccatgatctaacggttctaattcgtagcacaaatttcaac 4926206  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacag 225  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| | |||||||||||    
T  4926207 aatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtacaacagctacag 4926269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 7260257 - 7260418
Alignment:
Q  62 tggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaa 161  Q
    ||||||||||||| |||||||||||||||||||||||||  || ||||||||| |||||||| |||||| ||| ||| ||||||||| || |||||| ||    
T  7260257 tggatttgctgctatagcaaattcacacagtttgccgcagtagtaaatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaa 7260356  T
Q  162 caatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctac 223  Q
    |||||||| ||||||||||||||| ||  |||| || | ||||||||||  |||||||||||    
T  7260357 caatttcatacaatgtcagatcttaaccattcattttagatcagacggtttaaaacagctac 7260418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 225
Target Start/End: Complemental strand, 19681123 - 19680972
Alignment:
Q  74 tgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacaca 173  Q
    |||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||| ||| || | |||| ||||||||||||||    
T  19681123 tgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacataaattttaacaatttcacaca 19681024  T
Q  174 atgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacag 225  Q
    || ||| ||||| ||  |||| |||| ||||||||||| | |||||||||||    
T  19681023 atatcaaatcttaaccattcatttcagatcagacggtgtagaacagctacag 19680972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 1265058 - 1264952
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacgg-ttccaatttacatcacagatt 157  Q
    |||||||||||||||||||||||||||| |||||||||   |  || ||||||||| ||||||| ||||||| || || ||| |||| ||| ||||||||    
T  1265058 atctggatttgctgctgtagcaaattcaaacagtttgctataatagtaaatctcagccatcaattcatgatctgatggtttcaaattcacagcacagatt 1264959  T
Q  158 tcaacaa 164  Q
    | |||||    
T  1264958 ttaacaa 1264952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 1262089 - 1262040
Alignment:
Q  164 atttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgca 213  Q
    |||||||||||||| |||||||||| |||||||| | ||| |||||||||    
T  1262089 atttcacacaatgttagatcttgaccgttcactttagatcggacggtgca 1262040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 39305464 - 39305624
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  39305464 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaac 39305563  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctac 223  Q
    ||||||| ||||||||| ||||| || |||||||||| ||||||||||  | |||||||||    
T  39305564 aatttcatacaatgtcaaatcttaaccgttcacttcagatcagacggtatagaacagctac 39305624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 17540140 - 17539996
Alignment:
Q  81 aattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacacaatgtcag 180  Q
    ||||||||||||||||||||  || ||||||||| |||||||| |||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||     
T  17540140 aattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaatttcacacaatgtcaa 17540041  T
Q  181 atcttgactgttcacttcaaatcagacggtgcaaaacagctacag 225  Q
    ||||| || |||||||||| ||||||||||| | |||||||||||    
T  17540040 atcttaaccgttcacttcagatcagacggtgtagaacagctacag 17539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 9625448 - 9625596
Alignment:
Q  74 tgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaacaatttcacaca 173  Q
    |||||||||||||||||||||| ||||  || |||| ||||  |||||||||||||| ||||||||||||| | | ||||||||||||||||||||| ||    
T  9625448 tgtagcaaattcacacagtttgtcgcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgca 9625547  T
Q  174 atgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagcta 222  Q
    |||||||||||| || |||||||||| || |||||||| | ||||||||    
T  9625548 atgtcagatcttaaccgttcacttcagattagacggtgtagaacagcta 9625596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 59 - 268
Target Start/End: Original strand, 13083592 - 13083802
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagattt 158  Q
    |||||||||| ||| ||||||||||| |||||||||||||||  || |||||||||  |||||||||||||| || |||||||||| ||| ||| |||||    
T  13083592 atctggatttactgttgtagcaaatttacacagtttgccgcagtagcaaatctcagcgatcaatccatgatctgatggttccaattcacagcacggattt 13083691  T
Q  159 caacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaata-tttacggtaggaa 257  Q
    ||||||||||||||||||||||||||   ||||||| |||| ||||| ||||||| ||||||||||||| | |||||| ||||||| ||||| | || ||    
T  13083692 caacaatttcacacaatgtcagatctgagctgttcagttcagatcaggcggtgcagaacagctacagtgtgcaactgcgtgtaatattttacagcagaaa 13083791  T
Q  258 atcctcatccg 268  Q
    |||||||||||    
T  13083792 atcctcatccg 13083802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 32612371 - 32612479
Alignment:
Q  116 catcaatccatgatccgacggttccaattt-acatcacagatttcaacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaa 214  Q
    |||||||||||||||||||||| |||| || |||||||  ||||||| ||||| ||| ||| | |||||||||| |||||||||| |||  | |||||||    
T  32612371 catcaatccatgatccgacggtcccaaattcacatcacgaatttcaataattttacataatattagatcttgaccgttcacttcagatcgaatggtgcaa 32612470  T
Q  215 aacagctac 223  Q
    |||| ||||    
T  32612471 aacaactac 32612479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 41388878 - 41389002
Alignment:
Q  65 atttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttc-caatttacatcacagatttcaaca 163  Q
    ||||| || |||||||||||||||| ||||| ||||  || |||||||   |||||||  |||||  ||||||||  |||| ||||| | ||||||||||    
T  41388878 atttgatgttgtagcaaattcacacggtttgtcgcagtagcaaatctcgaccatcaatttatgatatgacggttctaaattcacatctcggatttcaaca 41388977  T
Q  164 atttcacacaatgtcagatcttgac 188  Q
    |||| ||| | | ||||||||||||    
T  41388978 attttacatagtatcagatcttgac 41389002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 225
Target Start/End: Complemental strand, 1080 - 914
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagattt 158  Q
    ||||| ||||||||||||||||||||||||||||||| ||||  || ||||||||  ||||||| ||||||| ||||||||||||| ||| ||| |||||    
T  1080 atctgaatttgctgctgtagcaaattcacacagtttgtcgcagtagcaaatctcaaccatcaattcatgatctgacggttccaattcacagcacggattt 981  T
Q  159 caacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacag 225  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||||| || ||||| |||||    
T  980 caacaattttacacaatgtcagatcttgaccgttcacttcagatcagacggtacagaacagttacag 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 38992903 - 38992702
Alignment:
Q  63 ggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagatttcaac 162  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||| |||||| || |||| ||||| | | ||||||||||||     
T  38992903 ggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagatttcaat 38992804  T
Q  163 aatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctacagtgggtaactgcatgtaatatttacggtaggaaatcct 262  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||| | |||| |||||| | | |||||| |||||   |||| | ||||||||||    
T  38992803 aatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatattacagcaggaaatcct 38992704  T
Q  263 ca 264  Q
    ||    
T  38992703 ca 38992702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 26692056 - 26692004
Alignment:
Q  62 tggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcag 114  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||    
T  26692056 tggatttgctgctgtagcaaattcacacagtttgccgcagtagcaaatctcag 26692004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 26691909 - 26691990
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaa 142  Q
    |||||||||| ||||||||||||||||| ||||  |||||||  || |||| |||| || |||||||||||  ||||| |||||    
T  26691909 atctggatttactgctgtagcaaattcaaacag--tgccgcagtagcaaatttcagccagcaatccatgatatgacgggtccaa 26691990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 22051 - 21890
Alignment:
Q  59 atctggatttgctgctgtagcaaattcacacagtttgccgcatgagaaaatctcagtcatcaatccatgatccgacggttccaatttacatcacagattt 158  Q
    ||||||||||| || |||| |||||||||||||||||  |||  || |||||     ||||||||||||||| ||||||||||||| |||  ||||||||    
T  22051 atctggatttgttgttgtaacaaattcacacagtttgttgcagtagcaaatc-----catcaatccatgatctgacggttccaattcacaatacagattt 21957  T
Q  159 ---caacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctac 223  Q
       ||| ||||| ||||||| | ||||||| || ||||| |||| ||||||| ||||| |||||||||    
T  21956 taacaataattttacacaatattagatcttaaccgttcaattcagatcagac-gtgcataacagctac 21890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 191736 - 191818
Alignment:
Q  141 aatttacatcacagatttcaacaatttcacacaatgtcagatcttgactgttcacttcaaatcagacggtgcaaaacagctac 223  Q
    |||||||| ||  ||||||||||||||||| || ||||||||||||||   |||||| | ||| |||||||||||||| ||||    
T  191736 aatttacaacatggatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtgcaaaacacctac 191818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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