View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11454_high_4 (Length: 316)
Name: NF11454_high_4
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11454_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 33238379 - 33238691
Alignment:
| Q |
1 |
ttgagccctttaggtgaaaaaatgaatgatgatgcaatggatttgatttttcaatgggggatagatgcactcccttttaggaaacaggatggttatgatc |
100 |
Q |
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| T |
33238379 |
ttgagccctttaggtgaaaaaatgaatgatgatgcaatggatttgatttttcaatgggggatagatgcactcccttttaggaaacaggatggctatgatc |
33238478 |
T |
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| Q |
101 |
ttactcaaaaatggaagtggttttgggatgttacaaagagagtgaatcttggaatacaggtaatttaatacaaaattttgttgtacacatacacataaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33238479 |
ttactcaaaaatggaagtggttttgggatgttacaaagagagtgaatcttggaatacaggtaatttaatacaacattttgttgtacacatacacataaat |
33238578 |
T |
|
| Q |
201 |
ataagtttattataagatctatgacaaactc--atgaaaaact--tagtgattct--tatatatgtttcctatgtgagttactaggtgaaaggagacaga |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33238579 |
ataagtttattataagatctatgacaaactcatatgaaaaacttatagtgattcttatatatatgtttcctatgtgagttactaggtgaaaggagacaga |
33238678 |
T |
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| Q |
295 |
tacatattcatct |
307 |
Q |
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||||||||||||| |
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| T |
33238679 |
tacatattcatct |
33238691 |
T |
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