View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11454_low_1 (Length: 496)
Name: NF11454_low_1
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11454_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 288 - 481
Target Start/End: Complemental strand, 31929327 - 31929134
Alignment:
| Q |
288 |
ctaattgaacaaaatgttagtctacattatgaagaaaaataatgtattattacatccatatttttcatgatccataaattattcaagagataaaaataaa |
387 |
Q |
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| T |
31929327 |
ctaattgaacaaaatgttagtctacattatgaagaaaaataatgtattattacatccaaatttttcatgatccataaattattcaagagagaaaaataaa |
31929228 |
T |
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| Q |
388 |
atgaattcattatgttgcaggacctgtttaagacaagaagggaaagtaattttgccgttaagcgaaggtgaccctacgacctcacgtgtgatat |
481 |
Q |
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| T |
31929227 |
atgaattcattatgttgcaggacctgtttaagacaagaagggaaagttattttgccgttaagagaaggtgaccctacgacctcacgtgtgatat |
31929134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 31929512 - 31929326
Alignment:
| Q |
55 |
agtttaagagttaacaaattcactacgattccagcccaataaacatgttttcattttcgagttaacttaattggactttatagtcgagtcaactcaaaat |
154 |
Q |
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| T |
31929512 |
agtttaagagttaacaaattcactacgagtccatccgagtaagcttggtttcattttcaagttaacttaattggagtttatagtcgagtcaactcaaaat |
31929413 |
T |
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| Q |
155 |
tgatacctaaacatacgatcctacgagttaactcgtgattttaactacctttatcaaaacataacaagattgtcaaactcctactct |
241 |
Q |
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| T |
31929412 |
tgatacctaaacatacgatcctacgagttaactcgtgattttaacaacctttatcaaaacataacaagattgtcaaactccaactct |
31929326 |
T |
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