View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11454_low_3 (Length: 349)
Name: NF11454_low_3
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11454_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 42286471 - 42286141
Alignment:
| Q |
15 |
catcaccaccctcagaagaaactaatattgaaatttctcctgaaacacctatcatatcaaaacaacccaaaaatcaacatcctcttagaacaagatcatc |
114 |
Q |
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| T |
42286471 |
catctccaccctcagaagaaactaatattgaaatttctcctgaaacacctatcatatcaaaacaacccaaaaatcaacatcctcttagaacaagatcatc |
42286372 |
T |
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| Q |
115 |
aagaaagttagcaatacttaaggttgatgaccaacaaaagaccaaaccaattgtatggtttgctgcaatactatgtttcatattcagctttacacttatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42286371 |
aagaaagttagcaatacttaaggttgatgaccaacaaaagaccaaaccaattgtatggtttgctgcaatactatgtttcatattcagctttacacttatc |
42286272 |
T |
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| Q |
215 |
ttctttggaattgcaacaattatttgttaccttacactcaaaccaagcaaccctttatttgatatttctaatgcaagcctaaatgttgtatattttgact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42286271 |
ttctttggaattgcaacaattatttgttaccttacactcaaaccaagcaaccctttatttgatatttctaatgcaagcctaaatgttgtatattttgact |
42286172 |
T |
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| Q |
315 |
caaaacaatacttcaatggtgatttcgctct |
345 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42286171 |
caaaacaatacttcaatggtgatttcgctct |
42286141 |
T |
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