View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11454_low_5 (Length: 293)
Name: NF11454_low_5
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11454_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 45 - 276
Target Start/End: Complemental strand, 32629587 - 32629363
Alignment:
| Q |
45 |
tttatagattctcttacttataaaatattcaacttacaatttttaattgatgtaagtgtgaaacttctaactcaaactacaaatatttaagtgtacatca |
144 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
32629587 |
tttatggattctcttacttataaaatattcaacttacaattttta-ttgattaaggtgtgagacttgtaactaccactacaaacatttaagtgtacatca |
32629489 |
T |
|
| Q |
145 |
aacaattttaaattattttagattgatttaaaaaatctattttaggatcgatttagatctacacagatctttattattaattatataccaacgaccaacc |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
32629488 |
aacaattttaaattgttttagattgatttaaaaaatctattttaggatcgatttagatct----agatctttattat--attatataccaactatcaacc |
32629395 |
T |
|
| Q |
245 |
ttctcgaaagacccacttcagatggatcactt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32629394 |
ttctcgaaagacccacttcagatggatcactt |
32629363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 32629908 - 32629874
Alignment:
| Q |
8 |
gacatcacactttaattcaaaatattaagataata |
42 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32629908 |
gacatcacactttaattcaaaatattaagataata |
32629874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41444688 - 41444639
Alignment:
| Q |
1 |
tgagatggacatcacactttaattcaaaatattaagataatagatttata |
50 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| |||||| |||||||||||| |
|
|
| T |
41444688 |
tgagttggacatcacaccttaactcaaaatcttaagacaatagatttata |
41444639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University