View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11454_low_6 (Length: 274)

Name: NF11454_low_6
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11454_low_6
NF11454_low_6
[»] chr1 (8 HSPs)
chr1 (18-241)||(6497181-6497404)
chr1 (18-257)||(6510167-6510409)
chr1 (18-177)||(6514531-6514690)
chr1 (47-214)||(6502542-6502709)
chr1 (20-127)||(6525868-6525975)
chr1 (51-176)||(47710892-47711017)
chr1 (18-115)||(47771526-47771623)
chr1 (18-115)||(47775678-47775775)
[»] scaffold0341 (2 HSPs)
scaffold0341 (18-257)||(11847-12089)
scaffold0341 (18-214)||(4191-4387)
[»] chr5 (1 HSPs)
chr5 (39-104)||(28843804-28843869)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 6497181 - 6497404
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497181 acagtagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 6497280  T
Q  118 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataataca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497281 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataataca 6497380  T
Q  218 cttctacatgaaatatatgatgac 241  Q
    ||||||||||||||||||||||||    
T  6497381 cttctacatgaaatatatgatgac 6497404  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 6510167 - 6510409
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |    
T  6510167 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaag 6510266  T
Q  118 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tac 216  Q
    | | |||||||||| |||||||||| || ||  ||||||| ||||||||||||||||||||  ||||| |||||||  |  ||  ||||||||||| | |    
T  6510267 tagaatctatgataattgttgcagtaccatcaatccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttc 6510366  T
Q  217 acttct--acatgaaatatatgatgacatgaaaagtatgactt 257  Q
    ||||||  |||||||| |||||| |||||||||||||||||||    
T  6510367 acttctaaacatgaaagatatgacgacatgaaaagtatgactt 6510409  T

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Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 6514531 - 6514690
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||| |||| ||||||||||| |    
T  6514531 acagaagccatggttggtctgctagctacattctcttgaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatg 6514630  T
Q  118 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatt 177  Q
    | |||||||||||| ||| |||||| |||||||||||||| |||||||||| ||||||||    
T  6514631 ttggatctatgatatttgctgcagtcccctccttccaatttctccatgcctacacaaatt 6514690  T

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Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 6502542 - 6502709
Alignment:
Q  47 attctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccc 146  Q
    |||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| || |  ||||||||| |||||||||| |||    
T  6502542 attctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccc 6502641  T
Q  147 tccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataat 214  Q
    ||  ||||||| |||||||||| ||||||||| |||| | ||| |||  || ||| ||||||||||||    
T  6502642 tctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataat 6502709  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 6525975 - 6525868
Alignment:
Q  20 agaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtg 119  Q
    |||||||||  |||||||||||||| |||| ||||||||||||||||| ||||| || || |||||||  ||||| ||   ||||||||||||||| |||    
T  6525975 agaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatgtg 6525876  T
Q  120 ggatctat 127  Q
    ||||||||    
T  6525875 ggatctat 6525868  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 47710892 - 47711017
Alignment:
Q  51 tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct 150  Q
    ||||||||||| |||||  |||| || || |||||||  ||||||||| ||||| ||||| |||| |  |||||||| ||| ||||    || ||||||     
T  47710892 tcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtaccctccc 47710991  T
Q  151 tccaattcctccatgcctgcacaaat 176  Q
    ||||| ||||||||||||||||||||    
T  47710992 tccaactcctccatgcctgcacaaat 47711017  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 47771623 - 47771526
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaa 115  Q
    |||| ||||||| |||| |||  | ||||||| ||||||||||||||||| |||||||| || |||||||  |||||||||  ||||  |||||||||    
T  47771623 acagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaa 47771526  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 47775775 - 47775678
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaa 115  Q
    |||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||||| ||||||||||  |||||||||  ||||  |||||||||    
T  47775775 acagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaa 47775678  T

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Target: scaffold0341 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 11847 - 12089
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| |    
T  11847 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatg 11946  T
Q  118 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataa-tac 216  Q
    | |  ||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||  ||||| |||||||  |  ||  ||||||||||| | |    
T  11947 tcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactactctttgttagatataatttc 12046  T
Q  217 acttct--acatgaaatatatgatgacatgaaaagtatgactt 257  Q
    ||||||  |||||||| |||||| |||||||||||||||||||    
T  12047 acttctaaacatgaaagatatgacgacatgaaaagtatgactt 12089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 4191 - 4387
Alignment:
Q  18 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||| |    
T  4191 acagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatg 4290  T
Q  118 tgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatataat 214  Q
    | |  ||||||||| |||||||||| |||||  ||||||| |||||||||| ||||||||| |||| | ||| |||  || ||| ||||||||||||    
T  4291 tcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcattctatgttagatataat 4387  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
Q  39 ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaa 104  Q
    ||||||||||| ||||| ||||||||||| |||||||| || |||||||  |||||||||| ||||    
T  28843804 ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa 28843869  T

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