View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11454_low_7 (Length: 216)
Name: NF11454_low_7
Description: NF11454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11454_low_7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 38041088 - 38041295
Alignment:
| Q |
14 |
ccattatcatgccttttataacatgctgctgtctgctgatacgcatataacatcacttaatttaaacttaaaatacatatgtttgcaaacgtagttcacg |
113 |
Q |
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| T |
38041088 |
ccattatcatgtcttttataacatgctgttgtctgttgatacgcatataacatcacttaatttgaacttaaaatacatatgtttgcaaacgtagttcacg |
38041187 |
T |
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| Q |
114 |
aagttgtcacac-aaatttcacattatcaccaggtat----atgtgacatttggcgagcgaaattgttaatgccatacaatagataaaaaatcaaccata |
208 |
Q |
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| T |
38041188 |
aagttgtcacacaaaaaatcacatgatcaccaggtatatagatgtgacatttggcaagcgaaattgttaatgccatacaatagataaaaaatcaaccata |
38041287 |
T |
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| Q |
209 |
attttcac |
216 |
Q |
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| T |
38041288 |
attttcac |
38041295 |
T |
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Back To:
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 31837474 - 31837631
Alignment:
| Q |
52 |
atacgcatataacatcacttaattta-aacttaaaatacatatgtttgcaaacgtagttcacgaagttgtcacacaaatttcacattatcaccaggtata |
150 |
Q |
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|||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||| || |
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| T |
31837474 |
atacgcatgtaacatcacttaattttgaacttaaaataaatatatttgcaaacgtagttcacgaagtgatctcacaaatttcacatta-------gt--- |
31837563 |
T |
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| Q |
151 |
tgtgacatttggcgagcgaaattg-ttaatgccatacaatagat-aaaaaatcaaccataattttcac |
216 |
Q |
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| T |
31837564 |
tgtgacatttggcgagcgaaattgtttaataccatacaatagataaaaaaatcaaccgtaattttcac |
31837631 |
T |
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