View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11455_high_1 (Length: 902)

Name: NF11455_high_1
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11455_high_1
NF11455_high_1
[»] chr8 (5 HSPs)
chr8 (16-892)||(37686082-37686968)
chr8 (666-892)||(33220540-33220753)
chr8 (540-700)||(4640713-4640873)
chr8 (552-678)||(43635142-43635268)
chr8 (572-618)||(33800498-33800544)
[»] chr4 (16 HSPs)
chr4 (16-192)||(5801285-5801461)
chr4 (557-678)||(53265809-53265931)
chr4 (578-678)||(28796658-28796758)
chr4 (607-693)||(53265910-53265996)
chr4 (609-693)||(33161699-33161783)
chr4 (577-693)||(46813892-46814007)
chr4 (572-693)||(36174503-36174625)
chr4 (566-678)||(47043928-47044041)
chr4 (543-678)||(40312731-40312869)
chr4 (543-678)||(40322807-40322945)
chr4 (615-693)||(42099431-42099510)
chr4 (607-649)||(40312710-40312752)
chr4 (607-649)||(40322786-40322828)
chr4 (607-693)||(887073-887161)
chr4 (551-628)||(1228030-1228106)
chr4 (607-693)||(28796737-28796825)
[»] chr3 (13 HSPs)
chr3 (16-163)||(30866447-30866594)
chr3 (601-700)||(47068195-47068294)
chr3 (572-678)||(53824322-53824428)
chr3 (537-693)||(2325485-2325642)
chr3 (537-693)||(44833467-44833629)
chr3 (572-678)||(35485275-35485383)
chr3 (609-693)||(42387851-42387936)
chr3 (578-678)||(42947413-42947514)
chr3 (607-693)||(35485362-35485449)
chr3 (609-693)||(42993635-42993719)
chr3 (607-693)||(16967853-16967942)
chr3 (607-693)||(53824407-53824496)
chr3 (609-650)||(42947495-42947536)
[»] chr2 (10 HSPs)
chr2 (537-700)||(37891619-37891782)
chr2 (537-693)||(12967267-12967424)
chr2 (607-693)||(11713076-11713162)
chr2 (578-678)||(22496013-22496116)
chr2 (563-678)||(11712981-11713097)
chr2 (607-693)||(22495947-22496034)
chr2 (572-700)||(2154294-2154423)
chr2 (609-678)||(18394910-18394979)
chr2 (609-678)||(42121933-42122002)
chr2 (607-693)||(42121866-42121954)
[»] chr7 (9 HSPs)
chr7 (540-700)||(30362795-30362955)
chr7 (536-653)||(42548157-42548273)
chr7 (607-688)||(38790969-38791050)
chr7 (540-678)||(1537186-1537324)
chr7 (607-693)||(48211897-48211984)
chr7 (572-678)||(48211812-48211918)
chr7 (610-678)||(31826114-31826182)
chr7 (611-678)||(26502371-26502438)
chr7 (611-678)||(26590276-26590343)
[»] chr1 (4 HSPs)
chr1 (540-678)||(39650196-39650334)
chr1 (607-693)||(47485505-47485593)
chr1 (607-693)||(39650313-39650402)
chr1 (552-678)||(45690987-45691114)
[»] scaffold1455 (2 HSPs)
scaffold1455 (572-678)||(313-419)
scaffold1455 (607-678)||(263-334)
[»] chr6 (4 HSPs)
chr6 (572-678)||(14830424-14830530)
chr6 (591-678)||(16444320-16444407)
chr6 (539-678)||(14153353-14153492)
chr6 (607-693)||(14153471-14153558)
[»] chr5 (8 HSPs)
chr5 (572-678)||(1974188-1974294)
chr5 (552-649)||(19401967-19402065)
chr5 (572-678)||(40017292-40017398)
chr5 (573-678)||(3461524-3461629)
chr5 (607-665)||(19401921-19401979)
chr5 (607-682)||(40017237-40017313)
chr5 (607-693)||(1974273-1974360)
chr5 (607-693)||(3461457-3461545)
[»] scaffold0016 (1 HSPs)
scaffold0016 (538-684)||(69720-69866)


Alignment Details
Target: chr8 (Bit Score: 743; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 16 - 892
Target Start/End: Original strand, 37686082 - 37686968
Alignment:
Q  16 tgaagaagtaggtacagtatgaaataaagttatggaatgaagaaatagaggcgagaaaatgtaaaagtgatatatactatttaaattggaaaggaacaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686082 tgaagaagtaggtacagtatgaaataaagttatggaatgaagaaatagaggcgagaaaatgtaaaagtgatatatactatttaaattggaaaggaacaaa 37686181  T
Q  116 ataaatctgctatagtcggtcaattactaaggataatggatggactctnnnnnnngaggtccataataggggctcccag----------tgatatggcaa 205  Q
    ||||||||||||||| || |||||||||| ||| ||||| ||||||||       |||||| ||||||||||||||||           |||||||||||    
T  37686182 ataaatctgctatagccgatcaattactatggacaatgggtggactctaaaaaaagaggtctataataggggctcccataaaattgagatgatatggcaa 37686281  T
Q  206 tctagtgaattttgattgaatataagtgtaaaattgttgtacactgacaatgcatatctcttaaatgtttacaattttatctatagtagtattttaatag 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686282 tctagtgaattttgattgaatatcagtgtaaaattgttgtacactgacaatgcatatctcttaaatgtttacaattttatctatagtagtattttaatag 37686381  T
Q  306 tgtgcataaaacatttaataaatgacttcatttcatatatcctagttgtggaggtatatttcgggtgatgaattctctatattgttggggtgttgtggtg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37686382 tgtgcataaaacatttaataaatgacttcatttcatatatcctagttgtggaggtatctttcgggtgatgaattctctatattgttggggtgttgtggtg 37686481  T
Q  406 tacatgtggctgaattgaactcaaagaaagaggtgtaccaaggttcagttggaggtgtggttagtgctcttgtagacgacaatagagtatatcatgaagc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37686482 tacatgtggctgaattgaactcaaagaaagaggtgtaccaaggttgagttggaggtgtggttagtgctcttgtagacgacaatagagtctatcatgaagc 37686581  T
Q  506 ttacagtgcaaaagctctagatagtatggggtaagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgc 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  37686582 ttacagtgcaaaagctctagatagtatggggtaagaattctcctctttacccaaatcgtttcgttcattcccaaagtaaaagtctaaaatggccttgcgc 37686681  T
Q  606 aacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgccgcgt 705  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |    
T  37686682 aacttaacatgcactagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgagcgtgacttaagtcacaccgcat 37686781  T
Q  706 cagttaactcacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcctttcttccttcctcacgttctattgaatcggttgttgtgta 805  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37686782 gagttaactcacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcctttcttccttcctcacattctattgaatcggttgttgtgta 37686881  T
Q  806 acagcccatgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaattccaatttaacagaaacctttgcctttg 892  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37686882 acaacccatgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaattcaaatttaacagaaacctttgcctttg 37686968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 666 - 892
Target Start/End: Complemental strand, 33220753 - 33220540
Alignment:
Q  666 gcgctagtgtattatgaacgtgacttaagttacgccgcgtcagttaactcacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcct 765  Q
    ||||||||||||| ||| |||||||||||| |||| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  33220753 gcgctagtgtattttgagcgtgacttaagtcacgcagcgtgagttaactcacgccgggaagaaaaaacatttctccttcaaacccagtttctttctgcct 33220654  T
Q  766 ttcttccttcctcacgttctattgaatcggttgttgtgtaacagcccatgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaatt 865  Q
    ||||||||||||||| | ||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33220653 ttcttccttcctcacatgctattgaatcggttgt-------------atgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaatt 33220567  T
Q  866 ccaatttaacagaaacctttgcctttg 892  Q
    |||||| | ||||||||||||||||||    
T  33220566 ccaattcatcagaaacctttgcctttg 33220540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 540 - 700
Target Start/End: Complemental strand, 4640873 - 4640713
Alignment:
Q  540 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 639  Q
    ||||||| ||| |||||||||  || ||| | ||| | |||||||||| |||||||| || | | |||||||||||||||||||||||||| ||| ||||    
T  4640873 gaattctgctcattacccaaactgtatcgctcatttccaaagtaaaagactaaaatgcccctacacaacttaacatgcgctagtgtattttttacatatg 4640774  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 700  Q
    ||||| |||| | | |||||| ||||||||||||||||| | |||||||||||||| ||||    
T  4640773 ttaagccacgcttcgtgacttaacatgcgctagtgtattcttaacgtgacttaagtcacgc 4640713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 552 - 678
Target Start/End: Original strand, 43635142 - 43635268
Alignment:
Q  552 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgtt 651  Q
    |||| ||||| ||| |||||||| |||||||||| ||||| | || || | ||||  |||||||||||||||||| |||||||||||||||||| ||| |    
T  43635142 ttactcaaatggttccgtttatttctaaagtaaatgtctatattgcccgtacgcatgttaacatgcgctagtgtaatttgtacttatgttaagttacgct 43635241  T
Q  652 gcatgacttgacatgcgctagtgtatt 678  Q
     | |||||| |||||||||||||||||    
T  43635242 tcgtgacttaacatgcgctagtgtatt 43635268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 572 - 618
Target Start/End: Complemental strand, 33800544 - 33800498
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcg 618  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||    
T  33800544 attcctaaagtaaatgtctaaaatgcccttgcgcatgttaacatgcg 33800498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 1e-65; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 5801285 - 5801461
Alignment:
Q  16 tgaagaagtaggtacagtatgaaataaagttatggaatgaagaaatagaggcgagaaaatgtaaaagtgatatatactatttaaattggaaaggaacaaa 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5801285 tgaagaagtaggtacagtatgaaatgaagttatggaatgaagaaatagaggcgagaaaatgtaaaagtgatatatactatttaaattggaaaggaacaaa 5801384  T
Q  116 ataaatctgctatagtcggtcaattactaaggataatggatggactctnnnnnnngaggtccataataggggctccc 192  Q
    |||||  |||||||| |||||||||||||||||  |||| ||||||||       ||||||||||||||||||||||    
T  5801385 ataaacttgctatagccggtcaattactaaggaccatgggtggactctaaaaaaagaggtccataataggggctccc 5801461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 557 - 678
Target Start/End: Original strand, 53265809 - 53265931
Alignment:
Q  557 caaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcat 655  Q
    ||||| |||||| | ||||||||||||||| || ||||||  | | ||||  ||||||||||||||| ||| |||||||||||||||||||||| | | |    
T  53265809 caaatggtttcgctcattcctaaagtaaaattccaaaatgctcctacgcatgttaacatgcgctagttgtaatttgtacttatgttaagtcacgctacgt 53265908  T
Q  656 gacttgacatgcgctagtgtatt 678  Q
    ||||| |||||||||||||||||    
T  53265909 gacttaacatgcgctagtgtatt 53265931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 28796658 - 28796758
Alignment:
Q  578 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtat 677  Q
    |||||||| ||| |||||| || || |||  |||||| ||||||||||||||| ||  |||||||||||||| | |||||||| ||||||||||||||||    
T  28796658 aaagtaaatgtccaaaatgtccatgtgcatgttaacacgcgctagtgtattttttatctatgttaagtcacgctacatgacttaacatgcgctagtgtat 28796757  T
Q  678 t 678  Q
    |    
T  28796758 t 28796758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 53265910 - 53265996
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| ||| || |||||||||||| || |||||| || ||||||||||| || ||| ||||| ||||    
T  53265910 acttaacatgcgctagtgtattttatacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtgttctgagcgtgagttaa 53265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 609 - 693
Target Start/End: Original strand, 33161699 - 33161783
Alignment:
Q  609 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||| |||||||||||| ||| |||||||||||||| |   |||||| ||||||||||||||||| ||| ||||| ||||    
T  33161699 ttaacatgcactagtgtattttttacctatgttaagtcacgctatgtgacttaacatgcgctagtgtattctgagcgtgagttaa 33161783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 693
Target Start/End: Original strand, 46813892 - 46814007
Alignment:
Q  577 taaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact-tatgttaagtcacgttgcatgacttgacatgcgctagtgt 675  Q
    ||||||||||||||||  || || | ||||  |||||||||| ||||||||||| |  | |||||||||||||| | |||||||| |||||||||||||     
T  46813892 taaagtaaaagtctaa--tgcccctacgcatattaacatgcgttagtgtatttttttatctatgttaagtcacgctacatgacttaacatgcgctagtgc 46813989  T
Q  676 attatgaacgtgacttaa 693  Q
    ||||||| ||||| ||||    
T  46813990 attatgagcgtgagttaa 46814007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 693
Target Start/End: Complemental strand, 36174625 - 36174503
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttgacatgcgct 670  Q
    ||||| ||||||||| || |||||| |  | ||||  ||||||||||| ||| ||| | |||||||||||||||||||| | | |||||| || ||||||    
T  36174625 attcccaaagtaaaaatccaaaatgccactacgcatgttaacatgcgccagttgtaatatgtacttatgttaagtcacgctacgtgacttaacttgcgct 36174526  T
Q  671 agtgtattatgaacgtgacttaa 693  Q
    |||||||| ||| ||||| ||||    
T  36174525 agtgtattctgagcgtgagttaa 36174503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 678
Target Start/End: Complemental strand, 47044041 - 47043928
Alignment:
Q  566 tcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgta-ttttgtacttatgttaagtcacgttgcatgacttgaca 664  Q
    ||||| ||||||||||||||  |  |||||| || ||||||  |||||||| ||||||||| |||| ||| ||||||||||| || | | ||| || |||    
T  47044041 tcgttcattcctaaagtaaatattcaaaatgcccctgcgcatgttaacatgtgctagtgtatttttttacctatgttaagtcgcgctacgtgagttaaca 47043942  T
Q  665 tgcgctagtgtatt 678  Q
    ||||||||||||||    
T  47043941 tgcgctagtgtatt 47043928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 678
Target Start/End: Complemental strand, 40312869 - 40312731
Alignment:
Q  543 ttctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattt---tgtacttatg 639  Q
    |||| ||| ||||||||||  ||||| | ||| | ||||||||||||||||||   ||| || |  |||||||||||||||||| |    ||||||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtgtaatagtatgtacttatg 40312770  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    ||| |||||| | | |||||| |||||||||||| ||||    
T  40312769 ttaggtcacgctacgtgacttaacatgcgctagtatatt 40312731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 678
Target Start/End: Complemental strand, 40322945 - 40322807
Alignment:
Q  543 ttctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattt---tgtacttatg 639  Q
    |||| ||| ||||||||||  ||||| | ||| | ||||||||||||||||||   ||| || |  |||||||||||||||||| |    ||||||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtgtaatagtatgtacttatg 40322846  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    ||| |||||| | | |||||| |||||||||||| ||||    
T  40322845 ttaggtcacgctacgtgacttaacatgcgctagtatatt 40322807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 693
Target Start/End: Complemental strand, 42099510 - 42099431
Alignment:
Q  615 tgcgctagtgtattttgta-cttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||| || | || |||||||||||| || |||||| |  |||||||||||||| ||||||||| ||||    
T  42099510 tgcgctagtgtattttttaacctaagttaagtcacgtagcgtgacttaagttgcgctagtgtattctgaacgtgagttaa 42099431  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 649
Target Start/End: Complemental strand, 40312752 - 40312710
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacg 649  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  40312752 acttaacatgcgctagtatattttgtacctaagttaagtcacg 40312710  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 607 - 649
Target Start/End: Complemental strand, 40322828 - 40322786
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacg 649  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  40322828 acttaacatgcgctagtatattttgtacctaagttaagtcacg 40322786  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 887161 - 887073
Alignment:
Q  607 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||| ||||| |  || || |||||||||||| || |||||| || ||||||||| |||| ||| ||||| ||||    
T  887161 acttaacatgcgctagtgaattttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtttattctgagcgtgagttaa 887073  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 628
Target Start/End: Complemental strand, 1228106 - 1228030
Alignment:
Q  551 tttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtatt 628  Q
    ||||||||||| |||||| | ||||| || |||||  || |||||| |  ||||||||||||||||||||||||||||    
T  1228106 tttacccaaattgtttcgctcattcccaaggtaaagttc-aaaatgcctctgcgcaacttaacatgcgctagtgtatt 1228030  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 28796737 - 28796825
Alignment:
Q  607 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| |  |  || |||||||||||| || |||||| || ||||||||||| || ||| ||||| ||||    
T  28796737 acttaacatgcgctagtgtattttttttatctaagttaagtcacgtagcgtgacttaacttgcgctagtgttttctgagcgtgagttaa 28796825  T

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Target: chr3 (Bit Score: 120; Significance: 6e-61; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 30866447 - 30866594
Alignment:
Q  16 tgaagaagtaggtacagtatgaaataaagttatggaatgaagaaatagaggcgagaaaatgtaaaagtgatatatactatttaaattggaaaggaacaaa 115  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30866447 tgaagaagtaggtacaatatgaaatgaagttatggaatgaagaaatagaggcgagaaaatgtaaaggtgatatatactatttaaattggaaaggaacaaa 30866546  T
Q  116 ataaatctgctatagtcggtcaattactaaggataatggatggactct 163  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||||||    
T  30866547 ataaacctgctatagccggtcaattactaaggaccatggatggactct 30866594  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 601 - 700
Target Start/End: Complemental strand, 47068294 - 47068195
Alignment:
Q  601 tgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 700  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||  | |||||| ||||||||||||||||||||| |||||||||||| ||||    
T  47068294 tgcgcaacttaacatacgctaatgtattatgtacttatgttaagtcacgtaacgtgacttaacatgcgctagtgtattatgagcgtgacttaagtcacgc 47068195  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 53824322 - 53824428
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||| |||||||| | || ||||| || ||||||  |||||||||||||||||| ||| ||| |||||||||||||| | | |||||| ||||||||||    
T  53824322 attcccaaagtaaatgactgaaatgcccatgcgcatgttaacatgcgctagtgtaatttttacctatgttaagtcacgctacgtgacttaacatgcgcta 53824421  T
Q  672 gtgtatt 678  Q
    |||||||    
T  53824422 gtgtatt 53824428  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 537 - 693
Target Start/End: Complemental strand, 2325642 - 2325485
Alignment:
Q  537 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgta-ct 635  Q
    ||||||||||  || ||| | |||| |||||||  ||||| ||||||||||| ||||||| || | ||||  ||||||||||||||||||||||||| ||    
T  2325642 taagaattctggtcattatctaaatggtttcgtccattcccaaagtaaaagtttaaaatgtccctacgcatgttaacatgcgctagtgtattttgtacct 2325543  T
Q  636 tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
     | |||| ||||| | || |||||| || |||||||||||||| ||| ||||| ||||    
T  2325542 aaagttatgtcacatagcgtgacttaacttgcgctagtgtattttgagcgtgagttaa 2325485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 537 - 693
Target Start/End: Original strand, 44833467 - 44833629
Alignment:
Q  537 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtact 635  Q
    |||||||||| ||| |||||||||| ||| |||||||| | |||||||||||| |||||| || | ||||  |||||||| |||||| ||| | | ||||    
T  44833467 taagaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaacatgtgctagttgtaatctatact 44833566  T
Q  636 tatgttaagtcac-----gttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||     || || |||||| || |||||||||||||| ||| ||||| ||||    
T  44833567 tatgttaagtcaccctacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 44833629  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 35485275 - 35485383
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgc 669  Q
    |||| ||||||||| || ||||||| || ||| ||  ||||||||||||||| |||||| |  || |||||||||||||||| | |||||| ||||||||    
T  35485275 attcttaaagtaaatgtttaaaatgcccctgcacatgttaacatgcgctagtatattttttttacctatgttaagtcacgttacgtgacttaacatgcgc 35485374  T
Q  670 tagtgtatt 678  Q
    |||||||||    
T  35485375 tagtgtatt 35485383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 609 - 693
Target Start/End: Complemental strand, 42387936 - 42387851
Alignment:
Q  609 ttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||| | || |||||||||||||| | | |||||| ||||||||||||||||| ||| ||||| ||||    
T  42387936 ttaacatgcgctagtgtatttttttacctatgttaagtcacgctacgtgacttaacatgcgctagtgtattctgagcgtgagttaa 42387851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 578 - 678
Target Start/End: Original strand, 42947413 - 42947514
Alignment:
Q  578 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgta 676  Q
    |||||||||||| ||||||  | | ||||  ||||||||||||||| ||| | |||||||||||||||||||| | | ||| || |||||||||||||||    
T  42947413 aaagtaaaagtccaaaatgctcctacgcatgttaacatgcgctagttgtaatatgtacttatgttaagtcacgctacctgatttaacatgcgctagtgta 42947512  T
Q  677 tt 678  Q
    ||    
T  42947513 tt 42947514  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 35485362 - 35485449
Alignment:
Q  607 acttaacatgcgctagtgta-ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||| |||| ||| || ||||||| |||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  35485362 acttaacatgcgctagtgtatttttttacctaagttaagttacgtagcgtgacttaacctgcgctagtgtattctgagcgtgagttaa 35485449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 609 - 693
Target Start/End: Original strand, 42993635 - 42993719
Alignment:
Q  609 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||||  || ||||| |||||||| | | |||||| || ||| |||||||||| ||| ||||| ||||    
T  42993635 ttaacatgcgctagtgtatttttaacctatgtaaagtcacgctacgtgacttaacttgcactagtgtattctgagcgtgagttaa 42993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 16967942 - 16967853
Alignment:
Q  607 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| |  |||||||||||||| ||| ||||| ||||    
T  16967942 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaatttgcgctagtgtattctgagcgtgagttaa 16967853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 53824407 - 53824496
Alignment:
Q  607 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| |  |||||||||||||| ||| ||||| ||||    
T  53824407 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaagttgcgctagtgtattctgagcgtgagttaa 53824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 650
Target Start/End: Original strand, 42947495 - 42947536
Alignment:
Q  609 ttaacatgcgctagtgtattttgtacttatgttaagtcacgt 650  Q
    |||||||||||||||||||||| ||| || ||||||||||||    
T  42947495 ttaacatgcgctagtgtattttttacctaagttaagtcacgt 42947536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 700
Target Start/End: Original strand, 37891619 - 37891782
Alignment:
Q  537 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtactt 636  Q
    |||||||||| |||||||  |||||| ||||  | ||||| ||| ||||||||||||||| || ||| |||||||||||| |||||||||||||||||||    
T  37891619 taagaattctgctctttattcaaatcatttcagtcattcccaaactaaaagtctaaaatgcccctgcacaacttaacatgtgctagtgtattttgtactt 37891718  T
Q  637 atgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 700  Q
    |||||||||||| || | |||||| |||||| |||||||||||||| |||||||||||| ||||    
T  37891719 atgttaagtcacattacgtgacttaacatgcactagtgtattatgagcgtgacttaagtcacgc 37891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 537 - 693
Target Start/End: Original strand, 12967267 - 12967424
Alignment:
Q  537 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaa-gtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact 635  Q
    |||||||||| ||| ||||| |||| ||| || | ||||  ||||||||| ||| |||||  || | ||||  ||||||||||||  ||||||||||||     
T  12967267 taagaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcgctgctgtattttgtacc 12967366  T
Q  636 tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||| | | |||||| || |||||||||||||| ||||||||| ||||    
T  12967367 tatgttaagtcacgctacgtgacttaacttgcgctagtgtattctgaacgtgagttaa 12967424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 11713076 - 11713162
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||||||| || |||||||||||| || |||||| || ||| | |||||||| ||| ||||| ||||    
T  11713076 acttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacttgcacaagtgtattctgagcgtgagttaa 11713162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 578 - 678
Target Start/End: Complemental strand, 22496116 - 22496013
Alignment:
Q  578 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtg 674  Q
    |||||||| |||||||||| |||| ||||  |||||||||| |||||||   |||| ||| |||||||||||||| | | |||||| |||||||||||||    
T  22496116 aaagtaaatgtctaaaatgcccttacgcatgttaacatgcgatagtgtatttttttttacctatgttaagtcacgctacgtgacttaacatgcgctagtg 22496017  T
Q  675 tatt 678  Q
    ||||    
T  22496016 tatt 22496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 563 - 678
Target Start/End: Original strand, 11712981 - 11713097
Alignment:
Q  563 gtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttg 661  Q
    |||||| | ||||| |||||||||||| |||||| || | || |  ||||||||||||||| ||| | |||||||||||||||||| | | | ||||||     
T  11712981 gtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgctagttgtaatatgtacttatgttaagtcatgctacgtgactta 11713080  T
Q  662 acatgcgctagtgtatt 678  Q
    |||||||||||||||||    
T  11713081 acatgcgctagtgtatt 11713097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 22496034 - 22495947
Alignment:
Q  607 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| | || || |||||||||||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  22496034 acttaacatgcgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 22495947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 572 - 700
Target Start/End: Original strand, 2154294 - 2154423
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgct 670  Q
    ||||| ||||||||||   |||||| || | |||||||||||||||  ||||||||||| | || |||||||||||||| | | |||||| |||||| ||    
T  2154294 attcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgcattagtgtatttttttacctatgttaagtcacgctacgtgacttaacatgcact 2154393  T
Q  671 agtgtattatgaacgtgacttaagttacgc 700  Q
    |||| ||| | | |||||||||||| ||||    
T  2154394 agtgcattcttagcgtgacttaagtcacgc 2154423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 18394979 - 18394910
Alignment:
Q  609 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||||||||||||||| ||| |||||||||||| | | | |||||| ||| |||||||||||||    
T  18394979 ttaacatgcgctagtgtattttttacctatgttaagtcaagctacgtgacttaacacgcgctagtgtatt 18394910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 609 - 678
Target Start/End: Complemental strand, 42122002 - 42121933
Alignment:
Q  609 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||| ||||||||||| ||| |||||||||||||  | | |||||| |||||||||||||||||    
T  42122002 ttaacatgcgttagtgtattttttacctatgttaagtcacactacgtgacttaacatgcgctagtgtatt 42121933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 42121954 - 42121866
Alignment:
Q  607 acttaacatgcgctagtgta--ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||  |||| ||| || |||||||||||| |  |||||  || |||||||||||||| ||| ||||| ||||    
T  42121954 acttaacatgcgctagtgtattttttttacctaagttaagtcacgtagtgtgactgaacttgcgctagtgtattctgagcgtgagttaa 42121866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 540 - 700
Target Start/End: Complemental strand, 30362955 - 30362795
Alignment:
Q  540 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 639  Q
    ||||||| |||||||   ||||||||||| | |||| ||||||||||||  ||||||  | |||||||||||||||| ||||||||||| ||||||||||    
T  30362955 gaattctgctctttatttaaatcgtttcgctcattcttaaagtaaaagttcaaaatgctcatgcgcaacttaacatgtgctagtgtattatgtacttatg 30362856  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 700  Q
    |||||||||||| | |||||| | ||||||||||||||||||| |||||||||||| ||||    
T  30362855 ttaagtcacgttacgtgacttaagatgcgctagtgtattatgagcgtgacttaagtcacgc 30362795  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 536 - 653
Target Start/End: Original strand, 42548157 - 42548273
Alignment:
Q  536 gtaagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact 635  Q
    ||||||||||| ||| ||||||||||||||| | | ||||| |||||||||||| |||||  | | ||||||||||||||||||||| ||||||||||||    
T  42548157 gtaagaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaatttcat-gcgcaacttaacatgcgctagcgtattttgtact 42548255  T
Q  636 tatgttaagtcacgttgc 653  Q
    |||||||||||| |||||    
T  42548256 tatgttaagtcatgttgc 42548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 607 - 688
Target Start/End: Original strand, 38790969 - 38791050
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtga 688  Q
    |||||||||||||||||||||||||||| || |||||||||||| || |||||| || |||||||||||||| ||| |||||    
T  38790969 acttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtga 38791050  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 540 - 678
Target Start/End: Complemental strand, 1537324 - 1537186
Alignment:
Q  540 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 639  Q
    ||||||| ||| |||||||||  || ||||| ||||  |||||||| ||  |||||| || ||||||  |||||||||||||||||||||| ||| ||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgctagtgtattttttacctatg 1537225  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||| | | | |||| |||| |||| |||||||    
T  1537224 ttaagtcacgctacgttacttaacatacgctggtgtatt 1537186  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 48211897 - 48211984
Alignment:
Q  607 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| | || || |||||||||||| | ||||||| || |||||||||||||| ||| ||||| ||||    
T  48211897 acttaacatgcgctagtgtattttcttacctaagttaagtcacgtagtatgacttaacttgcgctagtgtattctgagcgtgagttaa 48211984  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 48211812 - 48211918
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||||||||||||  | ||||||| || ||||||  |||||||| | ||||||||||| ||||||||||||  |  ||| | |||||| ||||||||||    
T  48211812 attcctaaagtaaatttttaaaatgtccatgcgcatgttaacatgtgttagtgtattttttacttatgttaaaccgtgttacgtgacttaacatgcgcta 48211911  T
Q  672 gtgtatt 678  Q
    |||||||    
T  48211912 gtgtatt 48211918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 678
Target Start/End: Complemental strand, 31826182 - 31826114
Alignment:
Q  610 taacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    ||||| ||||||||||||||| ||  || |||||||||||| || |||||| || ||||||||||||||    
T  31826182 taacaagcgctagtgtattttttatctaagttaagtcacgtagcgtgacttaacttgcgctagtgtatt 31826114  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 678
Target Start/End: Complemental strand, 26502438 - 26502371
Alignment:
Q  611 aacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||||||||| | |||| ||||||||||||||| | | || ||| |||||||| ||||||||    
T  26502438 aacatgcgctagtgtaatctgtatttatgttaagtcacgctacgtggcttaacatgcgccagtgtatt 26502371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 26590276 - 26590343
Alignment:
Q  611 aacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||||||||| | |||| ||||||||||||||| | | || ||| |||||||| ||||||||    
T  26590276 aacatgcgctagtgtaatctgtatttatgttaagtcacgctacgtggcttaacatgcgccagtgtatt 26590343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 540 - 678
Target Start/End: Original strand, 39650196 - 39650334
Alignment:
Q  540 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 639  Q
    ||||||| ||| ||||| |||| |||||| | |||||||||||||| ||| |||||| || | ||||  |||||||||||||||||||||| ||| ||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgctagtgtattttctacctatg 39650295  T
Q  640 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||||||| | | |||||| |||||||||||||||||    
T  39650296 ttaagtcacgctacgtgacttaacatgcgctagtgtatt 39650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 47485505 - 47485593
Alignment:
Q  607 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| |  || || |||||||||||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  47485505 acttaacatgcgctagtgtattttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 47485593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 39650313 - 39650402
Alignment:
Q  607 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| || ||| |||||||||| ||| ||||| ||||    
T  39650313 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaacttgctctagtgtattctgagcgtgagttaa 39650402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 678
Target Start/End: Complemental strand, 45691114 - 45690987
Alignment:
Q  552 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctag-tgtattttgtacttatgttaagtcacgt 650  Q
    |||| ||||| |||||| | ||||| |||||||||||| |||||| || | | ||  |||||||| ||||| | || | |||||||||||||||||  |     
T  45691114 ttactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatgagctagttataatgtgtacttatgttaagtctagc 45691015  T
Q  651 tgcatgacttgacatgcgctagtgtatt 678  Q
    | | |||||| |||||||||||||||||    
T  45691014 tacgtgacttaacatgcgctagtgtatt 45690987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 419 - 313
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||| |||||||||||| |||||| |||| |   |||||||||||||||||||| | |||||||||||||||||||| | | |||||| | |||||||     
T  419 attcccaaagtaaaagtccaaaatgcccttacatgacttaacatgcgctagtgtaatctgtacttatgttaagtcacgctacgtgacttaatatgcgctg 320  T
Q  672 gtgtatt 678  Q
    |||||||    
T  319 gtgtatt 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 607 - 678
Target Start/End: Complemental strand, 334 - 263
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| | | |||||| || ||||||||||||||    
T  334 acttaatatgcgctggtgtattttgtacctatgttaagtcacgctacgtgacttaacttgcgctagtgtatt 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 14830424 - 14830530
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||| |||||||| ||| |||||| || | | ||  |||||||||||||||||||||| ||| |||||||||||||| | | |||||| ||||||||||    
T  14830424 attcccaaagtaaatgtccaaaatgtccctacacatgttaacatgcgctagtgtattttttacctatgttaagtcacgctacgtgacttaacatgcgcta 14830523  T
Q  672 gtgtatt 678  Q
    |||||||    
T  14830524 gtgtatt 14830530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 678
Target Start/End: Original strand, 16444320 - 16444407
Alignment:
Q  591 aaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    |||||| || ||||||  |||||||||||||||||||||| ||| |||||||||| ||| | |||||||| |||||||||| ||||||    
T  16444320 aaaatgcccctgcgcatgttaacatgcgctagtgtattttttacctatgttaagttacgctacatgacttaacatgcgctaatgtatt 16444407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 678
Target Start/End: Original strand, 14153353 - 14153492
Alignment:
Q  539 agaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttat 638  Q
    |||||||| ||| ||||||||||  ||| | | ||||| |||||||| | | |||||  || | ||||  |||||||||||||||||||||| ||| |||    
T  14153353 agaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgctagtgtattttttacctat 14153452  T
Q  639 gttaagtcacgttgcatgacttgacatgcgctagtgtatt 678  Q
    ||| |||| || | | |||||| |||||||||||||||||    
T  14153453 gtttagtcgcgctacgtgacttaacatgcgctagtgtatt 14153492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 14153471 - 14153558
Alignment:
Q  607 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    |||||||||||||||||||||||| | ||||| | |||||||||| || |||||| |  |||||||||||| | ||| ||||| ||||    
T  14153471 acttaacatgcgctagtgtattttttaacttaagctaagtcacgtagcgtgacttaagttgcgctagtgtagtctgagcgtgagttaa 14153558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 678
Target Start/End: Original strand, 1974188 - 1974294
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||| |||||||| ||| ||||||  ||||||||  |||||||||||||||||||||| ||| ||||||||||| | ||   |||||| ||||||||||    
T  1974188 attcccaaagtaaatgtccaaaatgctcttgcgcatgttaacatgcgctagtgtattttttacctatgttaagtcgcattatgtgacttaacatgcgcta 1974287  T
Q  672 gtgtatt 678  Q
    |||||||    
T  1974288 gtgtatt 1974294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 649
Target Start/End: Complemental strand, 19402065 - 19401967
Alignment:
Q  552 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctag-tgtattttgtacttatgttaagtcacg 649  Q
    |||||||||| |||||  | ||||  |||||||||||| |||||| || | ||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  19402065 ttacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcgctagttgtaatttgtacttatgttaagtcacg 19401967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 40017398 - 40017292
Alignment:
Q  572 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 671  Q
    ||||| ||| |||| |||||||||| |||| ||||  |||||||| ||||||||||||| ||| |||||| |||||| || | |||||| | || |||||    
T  40017398 attcccaaaataaatgtctaaaatgtccttacgcaggttaacatgtgctagtgtattttttacctatgttgagtcacattacgtgacttaaaattcgcta 40017299  T
Q  672 gtgtatt 678  Q
    |||||||    
T  40017298 gtgtatt 40017292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 678
Target Start/End: Complemental strand, 3461629 - 3461524
Alignment:
Q  573 ttcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctag 672  Q
    |||| ||| |||| |||||||||  || |||| || |||||||| ||||||| ||||| ||| |||||||||||||||| | |||||| |||| |||||     
T  3461629 ttcccaaaataaatgtctaaaatacccctgcgtaagttaacatgtgctagtgcattttttacctatgttaagtcacgttacgtgacttaacatacgctaa 3461530  T
Q  673 tgtatt 678  Q
    ||||||    
T  3461529 tgtatt 3461524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 665
Target Start/End: Original strand, 19401921 - 19401979
Alignment:
Q  607 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacat 665  Q
    ||||||| |||||||||||||||||||| || |||||||||||| || |||||| ||||    
T  19401921 acttaacttgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacat 19401979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 682
Target Start/End: Complemental strand, 40017313 - 40017237
Alignment:
Q  607 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatga 682  Q
    |||||| || |||||||||||||| | || || |||||||||||| || |||||| || ||||||||||||||||||    
T  40017313 acttaaaattcgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattatga 40017237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 693
Target Start/End: Original strand, 1974273 - 1974360
Alignment:
Q  607 acttaacatgcgctagtgtattttgtact-tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||||||||||||||||||||  | || |||||||||||| |  |||||| |  |||||||||||||| ||| ||||| ||||    
T  1974273 acttaacatgcgctagtgtattttgttgtctaagttaagtcacgtagtgtgacttaagttgcgctagtgtattctgagcgtgagttaa 1974360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 693
Target Start/End: Complemental strand, 3461545 - 3461457
Alignment:
Q  607 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 693  Q
    ||||||||| ||||| |||||||| |  || || |||||||||||| || |||||| || |||| ||||||||| ||||||||| ||||    
T  3461545 acttaacatacgctaatgtattttttttacctaagttaagtcacgtagcgtgacttaacttgcgttagtgtattctgaacgtgagttaa 3461457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 684
Target Start/End: Original strand, 69720 - 69866
Alignment:
Q  538 aagaattctcctctttacccaaatcg-tttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtactt 636  Q
    ||||||| | |||||||| ||||| | ||||| | ||| | |||||||||||| |||||| |||| | ||  ||||||| || ||||||||| |||||||    
T  69720 aagaattttgctctttactcaaattggtttcgctcattaccaaagtaaaagtccaaaatg-ccttacacatgttaacatacgttagtgtattatgtactt 69818  T
Q  637 atgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaac 684  Q
    ||||||| ||| | | | ||||||||||||||| |||||||| |||||    
T  69819 atgttaaatcatgctacgtgacttgacatgcgcaagtgtattttgaac 69866  T

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