View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_18 (Length: 355)
Name: NF11455_high_18
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 35258323 - 35257996
Alignment:
| Q |
8 |
aaaaagaaattctcaaatatatatggatccatgtttcatatttccggtgggccaaaaactaggaagtttttggccctcttatcatgtaggacggtgttgt |
107 |
Q |
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| T |
35258323 |
aaaaagaaattctcaaatatatatgggtccatgtttcatatttccggtggaccaaaaacttcattgtttt-ggccctcttatcatgtaggacggtgttgt |
35258225 |
T |
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| Q |
108 |
agaactgccttaggtataaggggatcacaattaactattgttcggtgcaaaacagtagttaatttgtttggnnnnnnnnnnnatagataattttaggtgt |
207 |
Q |
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| T |
35258224 |
agaactgccttaggtataaggggatcacaattaactattgttcggtgcaaaacagtagttaatttgtttggttttttttta---agataattttaggtgt |
35258128 |
T |
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| Q |
208 |
ctgagcaattgcaattt-ctaagcataatgtccttttctttgtcaaaattaaaatgctatgtaaatgctattgcacgcatatatagataatgcacactag |
306 |
Q |
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| T |
35258127 |
ctgagcaattgcaattttctaagcataatgtccttttctctgtcaaaattaaaatgctatgtaaatgctattgcacgcatatataaataatgcacactag |
35258028 |
T |
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| Q |
307 |
ctgaatgacaaacaagatttggcagctaataa |
338 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35258027 |
ctgaatgacaaacaagatttggcagctaataa |
35257996 |
T |
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