View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_22 (Length: 298)
Name: NF11455_high_22
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 33238370 - 33238088
Alignment:
| Q |
1 |
cgataggcttatctgaataattcaaatgctctcttatgagtctaatgccaggtaactcagagaagtagtccactgcataaaatctgatcttattcttcaa |
100 |
Q |
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| T |
33238370 |
cgataggcttatccgaataattcaaatgctctcttatgagtctaatgccaggtaactcagagaagtagtccactgcataaaatctgatcttattcttcaa |
33238271 |
T |
|
| Q |
101 |
tgaatcgaacttgatcttctgatcatcaacatcccagatcgggatccacaaaatcttgaaatcctctttcttgtaacctgttatcacttgtggattgtcc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33238270 |
cgaatcgaacttgatcttctgatcatcgacatcccagatcgggatccacaaaatcttgaaatcctctttcttgtaaccttttatcacttgtggattgtcc |
33238171 |
T |
|
| Q |
201 |
tgcaatctgtcatggatagaatttaacagcaggatctcatcgtcaactttgttgaggcttgaaatgaacaacaacacatattt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33238170 |
tgcaatctgtcatggatagaatttaacagcaggatctcatcgtcaactttgttgaggcttgaaatgaacaacaacacatattt |
33238088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 33230560 - 33230457
Alignment:
| Q |
144 |
atccacaaaatcttgaaatcctctttcttgtaa---cctgttatca---cttgtggattgtcctgcaatctgtcatggatagaatttaacagcaggatct |
237 |
Q |
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|||||||||||||||||||||||||||||| || ||| ||| || ||||||| |||||||||||||| | || ||| ||||||||||||| |||| |
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| T |
33230560 |
atccacaaaatcttgaaatcctctttcttgaaacttccttttaacacttcttgtggtttgtcctgcaatcttttatagattgaatttaacagcaaaatct |
33230461 |
T |
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| Q |
238 |
catc |
241 |
Q |
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|||| |
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| T |
33230460 |
catc |
33230457 |
T |
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