View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_29 (Length: 250)
Name: NF11455_high_29
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48936341 - 48936580
Alignment:
| Q |
1 |
aacccaaaagctaataaattatcagcattactattaacagaagcaaatgaaaagttctaactaactgatttatcctattttggtgttacctctcaacata |
100 |
Q |
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| T |
48936341 |
aacccaaaagctaataaattatcagcattactattaacagaagcaaatgaaaagttctagctaactgatttatcctattttggtgttacctctcaacata |
48936440 |
T |
|
| Q |
101 |
cccccttactaaggtgtttccacagataaacgacgaatgattccttacgattgataaaaagatggtataagaaattcttggacattatgattgatagaag |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
48936441 |
ccccctttctaaggtgtttccacagataaacgacgaatgattccttacgattgataaaatgatggtataagaaattcttggccattatgattgatagaag |
48936540 |
T |
|
| Q |
201 |
gatttcataatagcccatatgaagctgtgtctagtttcat |
240 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
48936541 |
gatttcataatagtccatatgaagctgtgtctagtttcat |
48936580 |
T |
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