View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_33 (Length: 242)
Name: NF11455_high_33
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30221902 - 30221677
Alignment:
| Q |
1 |
tagattttggctatcaaaattagagtatgagtgaaaataagtacagcatcaaatttttagatgagtggttaaataatgtgtgacatacctcagacccttt |
100 |
Q |
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| T |
30221902 |
tagattttggctatcaaaattagagtatgagtgaaaataagtaaagcatcaaatttttagatgagtggttaaataatgtgtgacatacctcagacccttt |
30221803 |
T |
|
| Q |
101 |
taatttcatctccaaattcaagagcaaacctatgagataaacaccgaaagagcgtctcttccttttgattaacttacgagctttccaaacaaactcaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30221802 |
taatttcatctccaaattcaagagcaaacctatgagataaacaccgaaagagcgtctcttccttttgattaacttacgagctttccaaacaaactcaaga |
30221703 |
T |
|
| Q |
201 |
gggtctgattgggttagcttaggtat |
226 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
30221702 |
gggtctgattggcttagcttaggtat |
30221677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 30227610 - 30227761
Alignment:
| Q |
55 |
ttttagatgagtggttaaa----taatgtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaacaccgaaag |
150 |
Q |
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||||||||||||||||||| ||| |||| ||| ||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
30227610 |
ttttagatgagtggttaaaatattaacgtgtcacacacctcagacccccttaacttcatttccaaatccaagagcaaagctatgagataaacactgaaag |
30227709 |
T |
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| Q |
151 |
agcgtctcttccttttgattaacttacgagctttccaaacaaactcaagagg |
202 |
Q |
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| T |
30227710 |
aacgtctcttcctcttgattagttcacgagtattccaaacaaactcaagagg |
30227761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 30030963 - 30031136
Alignment:
| Q |
34 |
aaaataagtacagcatcaaatttttagatgagtggttaaa---taatgtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacc |
130 |
Q |
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||||||| || | ||||||| |||||| ||||| ||||| |||||||| ||| ||||||| |||| ||| | |||||||||||| || ||||||| | |
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| T |
30030963 |
aaaataaataaaacatcaaaattttaggtgagttattaaagattaatgtgtcacacacctcaggccctcttagtctcatctccaaatccatgagcaaagc |
30031062 |
T |
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| Q |
131 |
tatgagataaacaccgaaagagcgtctcttccttttgattaacttacgagctttccaaacaaactcaagagggt |
204 |
Q |
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| T |
30031063 |
tataagataaacactgaaagaatgtctcttcctcttgattagttcacgagaattccaaacaaactcaagagggt |
30031136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 30047277 - 30047405
Alignment:
| Q |
74 |
taatgtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaacaccgaaagagcgtctcttccttttgattaac |
173 |
Q |
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||||||| |||| ||||||| ||| ||||| |||||||||||| || ||||| | ||| |||||||||| |||||| ||||||||||| ||||||| |
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| T |
30047277 |
taatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttgattagt |
30047376 |
T |
|
| Q |
174 |
ttacgagctttccaaacaaactcaagagg |
202 |
Q |
| |
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| ||| | |||||||||||||||||||| |
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| T |
30047377 |
tcacgggaattccaaacaaactcaagagg |
30047405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 30061618 - 30061746
Alignment:
| Q |
74 |
taatgtgtgacatacctcagacccttttaatttcatctccaaattcaagagcaaacctatgagataaacaccgaaagagcgtctcttccttttgattaac |
173 |
Q |
| |
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||||||| |||| ||||||| ||| ||||| |||||||||||| || ||||| | ||| |||||||||| |||||| ||||||||||| ||||||| |
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| T |
30061618 |
taatgtgggacacacctcaggtcctcttaatctcatctccaaatccatgagcatagctacaagataaacactgaaagaacgtctcttcctcttgattagt |
30061717 |
T |
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| Q |
174 |
ttacgagctttccaaacaaactcaagagg |
202 |
Q |
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| ||| | |||||||||||||||||||| |
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| T |
30061718 |
tcacgggaattccaaacaaactcaagagg |
30061746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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