View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_36 (Length: 239)
Name: NF11455_high_36
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 48936323 - 48936115
Alignment:
| Q |
8 |
tgtttacgcgattatatcacaagtataaatgtaatttatctccaatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacag |
107 |
Q |
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| T |
48936323 |
tgtttacgcgattatatcacaagtataaatgtaatctatctccaatgaataatacaatctgaaaatgtagtcaataaaattgttttggtggtgctgacag |
48936224 |
T |
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| Q |
108 |
aggtaaaaatagtcagaatgcatttatcatgttctattataattatgttgattatggactcttttagagagtttagagtgtgatagaaggatagatgagg |
207 |
Q |
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| T |
48936223 |
aggtaaaaatagtcagaatgcatttatcatgttctattataat---------tatggactcttttagagagtttagagtgtgatagaaggatagatgagg |
48936133 |
T |
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| Q |
208 |
atacaatatgtactttgt |
225 |
Q |
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|||||||||||||||||| |
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| T |
48936132 |
atacaatatgtactttgt |
48936115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 36969366 - 36969546
Alignment:
| Q |
50 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacagaggtaaaaa-----tagtcagaatgcatttatcatgttctat |
144 |
Q |
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| T |
36969366 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgaaagaagtaaaaataaaatagtcagaattcctttatcaggttctat |
36969465 |
T |
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| Q |
145 |
tataattatgttgattatggactcttttagagagtttagagtgtgatagaaggatagatgaggatacaatatgtactttgt |
225 |
Q |
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| T |
36969466 |
tataattatgttgattatggagtttttaagagagtttagagtgtgatagaaggatagatgaggatacaatatgtactttgt |
36969546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 47109067 - 47108900
Alignment:
| Q |
50 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacagaggtaaaaatagtcagaatgcatttatcatgttctattataa |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | | ||| |||||||||||| |
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| T |
47109067 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgaaagatgtaaaaataa---------aatagtcaggttctattataa |
47108977 |
T |
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| Q |
150 |
ttatgttgattatggactctttt-agagagtttagagtgtgatagaaggatagatgaggatacaatatgtactttgt |
225 |
Q |
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| T |
47108976 |
ttatgttgattatggattttttttagagagtttagagtgtgatagaaggatagatgaggatacgatatgtactttgt |
47108900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 47109474 - 47109508
Alignment:
| Q |
51 |
aatgaataatacaatctgataatgtagtcaataaa |
85 |
Q |
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| T |
47109474 |
aatgaataatacaatctgataatgtagtcaataaa |
47109508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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