View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11455_high_4 (Length: 661)
Name: NF11455_high_4
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 206 - 646
Target Start/End: Original strand, 54235219 - 54235651
Alignment:
| Q |
206 |
tacacagtgcagttgtgattactacttatatatatagcagtggtactccaacgcaagctaaaaaagttaagcacaaagcacatcaaataacaataacaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235219 |
tacacagtgcagttgtgattactacttatatatatagtagtggtactccaacgcaagctaaaaaagttaagcacaaagcacatcaaataacaataacaat |
54235318 |
T |
|
| Q |
306 |
acactaacttttcatcttttcatttcattcacttcacatgactcgtcctttcagatttctcggcgagctcaactcgtcttcctccgattcacctgactca |
405 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54235319 |
acactaacttt--------tcatttcattcacttcacatgactcgtcctttcagatttctcggcgagctcaactcgtcttcctccgattcacctgagtca |
54235410 |
T |
|
| Q |
406 |
tccaccgtcgttgattccgatttcgtcgtcatcctcgctgctcttctctgtgctctcatctgcgttctaggtcttgttgccgtcacccgctgcggttgtc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235411 |
tccaccgtcgttgattccgatttcgtcgtcatcctcgctgctcttctctgtgctctcatctgcgttctaggtcttgttgccgtcacccgctgcggttgtc |
54235510 |
T |
|
| Q |
506 |
tccgccgcctacgtctctcctcaaccacaaacaacacttctccagctgcacctccagctgctgccaacaaaggcgtcaagaagaaggttctccgttctct |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235511 |
tccgccgcctacgtctctcctcaaccacaaacaacacttctccagctgcacctccagctgccgccaacaaaggcgtcaagaagaaggttctccgttctct |
54235610 |
T |
|
| Q |
606 |
tccaaagctcacagcaacagaggaatccgccgtgaaattct |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54235611 |
tccaaagctcacagcaacagaggaatccgccgtgaaattct |
54235651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 576 - 646
Target Start/End: Original strand, 38241832 - 38241902
Alignment:
| Q |
576 |
aggcgtcaagaagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattct |
646 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
38241832 |
aggcgtcaagaagaaggttctcctctctcttccaaagcttacagcaacagaggaatacaccgtgaaattct |
38241902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 47181857 - 47181685
Alignment:
| Q |
11 |
cacagagcataaccccacatcattcacatttaccgtcatacaaacacaattcaatttcaagtcttgttgagacacttccttttccattacagaattttca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47181857 |
cacacagcataaccccacatcattcacatttatcgtcggacaaacacaattcaatttcaagtcttgttgagacacttccttttccattacaaaattttca |
47181758 |
T |
|
| Q |
111 |
atacnnnnnnnctcactannnnnnnaaataacaaatattcgatttgttcttgtatgaaaaaagtagtatcttc |
183 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47181757 |
atactttttttctcactatttttttaaataacaaatattcgatttgttcttgtatgaaaaaagtagtatcttc |
47181685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 576 - 646
Target Start/End: Original strand, 7311063 - 7311133
Alignment:
| Q |
576 |
aggcgtcaagaagaaggttctccgttctcttccaaagctcacagcaacagaggaatccgccgtgaaattct |
646 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
7311063 |
aggcgtcaagaagaaggttctcctctctcttccaaagcttacaacaacagaggaatacgccgtgaaattct |
7311133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 2311884 - 2311918
Alignment:
| Q |
406 |
tccaccgtcgttgattccgatttcgtcgtcatcct |
440 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2311884 |
tccactgtcgttgattccgatttcgtcgtcatcct |
2311918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University