View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_high_8 (Length: 512)
Name: NF11455_high_8
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 23 - 502
Target Start/End: Complemental strand, 2655963 - 2655492
Alignment:
| Q |
23 |
aaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatcatctgtttgatgnnnnnnnaatgatgttacctctttgtctacattttcttt |
122 |
Q |
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| T |
2655963 |
aaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatcatatgtttgatgtttttttaatgatgttacctgtttatctacattttcttt |
2655864 |
T |
|
| Q |
123 |
gtcgttaaaaatcagatggcagattatgttctgttcatctattatgcaattagtcatttgatttcaagactttgnnnnnnn-caattgctatttcctata |
221 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
2655863 |
gtcgttaataatcagatggcagattatgttctgttcatctattatacaattagtcatttgatttcaagactttgtttttcttcaattgctatttgctata |
2655764 |
T |
|
| Q |
222 |
atctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgcggctgataataatttggttcatttgattgattagtctaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
2655763 |
atctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgctgctaataataatttggttcatttgattgattagtctaa |
2655664 |
T |
|
| Q |
322 |
accacaatt-agtcattttgattgatcactgattccaataaggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagca |
420 |
Q |
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||||||||| || | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655663 |
accacaattcaggccat----------agtgattccaataaggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagca |
2655574 |
T |
|
| Q |
421 |
aaattatttctgcatcaatgtcattctgttttaacgaagcaaacttaattttatgaatgcttctccttcttttacgcctatg |
502 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655573 |
aaattgtttctgcatcaatgtcattctgtcttaacgaagcaaacttaattttatgaatgcttctccttcttttacgcctatg |
2655492 |
T |
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