View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_11 (Length: 487)
Name: NF11455_low_11
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Original strand, 41508147 - 41508613
Alignment:
| Q |
7 |
gaagcagagaccctgtcttcgaggctgaaattagggtttcggctcttcaagtaattgaataaatatgatttcatcaaattcagaatttcagataagatat |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41508147 |
gaagcacagaccctgtcttcgaggctgaaattagggtttcggctcttcaagtaattgaataaatatgatttcatcaaattcagaatttcagataagatat |
41508246 |
T |
|
| Q |
107 |
acagctggcatccggtaatcatggttaccgagggaaatataatgagtttccttacttgattttattcatttatcatttttgttttctgtaaagaaaattt |
206 |
Q |
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| T |
41508247 |
acagcaggcatccggtaatcatggttaccgagggaaatataatgagtttccgtacttgattttattcatttatcatttttgttttctgtaaagaaaattt |
41508346 |
T |
|
| Q |
207 |
ctttgcactatgacagtagtatgattttaacattagagctacaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41508347 |
ctttgcactatgacagtagtatgattttaacattagagctacaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagag |
41508446 |
T |
|
| Q |
307 |
catccacgatgaaaatcgttaaaggaaaaaatgtggagtatnnnnnnntaatattctatcaaattctagatatgattcaatgcatatacctataaatggt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41508447 |
catccacgatgaaaatcgttaaaggaaaaaatgtggagtataaaaaaataatattctatcaaattctagatatgattcaatgcatatacctataaatggt |
41508546 |
T |
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| Q |
407 |
ttcagaagaac--nnnnnnnntatgaatataaaagcttgataagagtactaataaaaagcttacatc |
471 |
Q |
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| T |
41508547 |
ttcagaagaacaaaaaaaaaatatgaatataaaagcttgataagagtacaaatgaaaagcttacatc |
41508613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 48 - 413
Target Start/End: Original strand, 41518308 - 41518673
Alignment:
| Q |
48 |
gctcttcaagtaattgaataaatatgatttcatcaaattcagaatttcagataagatatacagctggcatccggtaatcatggttaccgagggaaatata |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |
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| T |
41518308 |
gctcttcaagtaattgaataaatatgatttcatcaaattcagaattacagataagatatacagcaggcgtcctgtaatcatgtttaccgagggaaatatt |
41518407 |
T |
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| Q |
148 |
atgagtttccttacttgattttattcatttatcatttttgttttctgtaaagaaaatttctttgcactatgacagtagtatgattttaacattagagcta |
247 |
Q |
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| T |
41518408 |
atgagtttccttacctgattttattcatttatcatttttgttttctggaaagaaaatttctttgcactatgacagtagagtgattttcacattagagcta |
41518507 |
T |
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| Q |
248 |
caactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatccacgatgaaaatcgttaaaggaaaaaatgtggagtat |
347 |
Q |
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||||||||| ||| |||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||| |
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| T |
41518508 |
caactaagttccctttttacaaatggccttgttggttttgcttcttcaccaagtgagagaatccacgatgaaaatcatttaaggaaaaaatttggagtat |
41518607 |
T |
|
| Q |
348 |
nnnnnnntaatattctatcaaattctagatatgattcaatgcatatacctataaatggtttcagaa |
413 |
Q |
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| ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
41518608 |
aaaacaagattattctatcaaattctagataagattcaatgcatagaactataaatggtttcagaa |
41518673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 228 - 417
Target Start/End: Original strand, 33078814 - 33079006
Alignment:
| Q |
228 |
tgattttaacattagagctacaactaagtccccattttgctaatagccttgtt-ggttttgcttcttcaccaagtgagagcatccacgatgaaaatcgtt |
326 |
Q |
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||||||| ||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
33078814 |
tgattttgacattagagctgcaactaagtcccaattttgctaataaacttgtttggttttgcttcttcaccaagtgagagcatccaagatgaaaattgtt |
33078913 |
T |
|
| Q |
327 |
aaagg--aaaaaatgtggagtatnnnnnnntaatattctatcaaattctagatatgattcaatgcatatacctataaatggtttcagaagaac |
417 |
Q |
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|||| |||||| |||||||| || ||||||| ||||| ||| || | ||||| ||||| | |||||||||||||||||||||| |
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| T |
33078914 |
taaggaaaaaaaacatggagtataaaacaatagcattctattaaattataggtaaggttcaaagcatagagctataaatggtttcagaagaac |
33079006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 33080576 - 33080672
Alignment:
| Q |
215 |
tatgacagtagtatgattttaacattagagctacaac---taagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatc |
310 |
Q |
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|||||||||||| |||||| |||| ||||||||||| || |||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
33080576 |
tatgacagtagt--gattttcacatcagagctacaacaattaggtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatc |
33080672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 41522803 - 41522899
Alignment:
| Q |
215 |
tatgacagtagtatgattttaacattagagct---acaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatc |
310 |
Q |
| |
|
|||||||||||| |||||| | ||||||||| |||| ||||||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
41522803 |
tatgacagtagt--gattttcagattagagcttaaacaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatc |
41522899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 41467787 - 41467870
Alignment:
| Q |
51 |
cttcaagtaattgaataaatatgatttcatcaaattcagaatttcagataagatatacagctggcatccggtaatcatggttacc |
135 |
Q |
| |
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|||||||||||||| || |||||| |||| |||||||| ||| |||||||| ||||||||| ||||| | ||||||||| ||||| |
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| T |
41467787 |
cttcaagtaattgactatatatga-ttcaccaaattcaaaatatcagataatatatacagcgggcattctgtaatcatgtttacc |
41467870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 41513872 - 41513951
Alignment:
| Q |
247 |
acaactaagtccccattttgctaatagccttgttggttttgcttcttcaccaagtgagagcatccacgatgaaaatcgtt |
326 |
Q |
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|||| ||||||||| ||| |||||| ||||| |||||||||| |||||||||||||||||||| | ||||||||||| |
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| T |
41513872 |
acaattaagtccccttttcgctaatgcccttgctggttttgctacttcaccaagtgagagcatcttggttgaaaatcgtt |
41513951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 33078370 - 33078424
Alignment:
| Q |
47 |
ggctcttcaagtaattgaataaatatgatttcatcaaattcagaatttcagataa |
101 |
Q |
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| T |
33078370 |
ggctcttcaagtaattggctatatatgatttcatggaaatcagaatttcagataa |
33078424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 41498038 - 41498082
Alignment:
| Q |
47 |
ggctcttcaagtaattgaataaatatgatttcatcaaattcagaa |
91 |
Q |
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| T |
41498038 |
ggctcgtcaagtaattgactatatatgatttcaccaaattcagaa |
41498082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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