View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11455_low_12 (Length: 470)

Name: NF11455_low_12
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11455_low_12
NF11455_low_12
[»] chr6 (9 HSPs)
chr6 (19-453)||(16571847-16572281)
chr6 (214-470)||(16873865-16874120)
chr6 (215-470)||(16580005-16580260)
chr6 (215-470)||(16615120-16615375)
chr6 (216-334)||(16783416-16783533)
chr6 (247-362)||(16977898-16978013)
chr6 (22-75)||(16873805-16873858)
chr6 (68-141)||(16783756-16783829)
chr6 (60-101)||(16832438-16832479)
[»] scaffold0256 (1 HSPs)
scaffold0256 (22-470)||(11460-11913)
[»] chr2 (4 HSPs)
chr2 (262-336)||(32792500-32792574)
chr2 (262-361)||(21628765-21628865)
chr2 (249-363)||(14535925-14536036)
chr2 (140-212)||(32792071-32792143)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 16571847 - 16572281
Alignment:
Q  19 aactgcagattaggcacattatttctctttacatggtttatcagttttgaacagaaatctgatttgaatattagttgcatatttccctgttctcttttct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16571847 aactgcagattaggcacattatttctctttacatggtttatcagttttgaacagaaatctgatttgaatattagttgcatatttccttgttctcttttct 16571946  T
Q  119 gctgaattaattacatttgaaatttggtcaatgctctgtattttatgtgattacattatgcgttaaacatcacaaaggcatgaacaccttgttcgtttgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16571947 gctgaattaattacatttgaaatttggtcaatgctctgtattttatgtgattacattatgcgttaaacatcacaaaggcatgaacaccttgttcgtttgg 16572046  T
Q  219 attaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcatttttta 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||     
T  16572047 attaatcaatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttacatgctttgttgaaaattgtaaatttacagattcattttttg 16572146  T
Q  319 catcttctaacaatctcactctgtcttcgattcttatagtcttcagtttttaagttttctttcatttgaatcatcatattcaattgaggacatctctttt 418  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  16572147 catcttctaataatctcactctgtcttcgattcttatagtcttcaattattaagttttctttcatttgaatcatcatattcaattgagtaaatctctttt 16572246  T
Q  419 gtaatttgttgctaatctaagcatgcgtttattta 453  Q
    | ||||||||||||| |||||||||||||||||||    
T  16572247 gcaatttgttgctaagctaagcatgcgtttattta 16572281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 214 - 470
Target Start/End: Original strand, 16873865 - 16874120
Alignment:
Q  214 tttggattaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcatt 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  16873865 tttggattaatcaatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcatt 16873963  T
Q  314 ttttacatcttctaacaatctcactctgtcttcgattcttatagtcttcagtttttaagttttctttcatttgaatcatcatattcaattgaggacatct 413  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||    
T  16873964 ttttgcatcatctaacaatctcactctgtcttcaattcttatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatct 16874063  T
Q  414 cttttgtaatttgttgctaatctaagcatgcgtttatttaacgtaacaattaactct 470  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  16874064 cttttgtaatttgttgcttagctaagcatgcgtttatttaacgtaacaattaactct 16874120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 215 - 470
Target Start/End: Original strand, 16580005 - 16580260
Alignment:
Q  215 ttggattaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattt 314  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  16580005 ttggattaatcaatgattaatttatttagaaacattctgtagtacccttcctaaatcctttatttgctttgttgaaaattgtaaatttacatattcattt 16580104  T
Q  315 tttacatcttctaacaatctcactctgtcttcgattcttatagtcttcagtttttaagttttctttcatttgaatcatcatattcaattgaggacatctc 414  Q
    | | |||||||||||||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  16580105 tatgcatcttctaacaatctcactctgtcttcgattcttacagtcctcaattattatgttttctttcatttgaatcatcatattcacttgagtacatctc 16580204  T
Q  415 ttttgtaatttgttgctaatctaagcatgcgtttatttaacgtaacaattaactct 470  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  16580205 ttttgtaatttgttgctaagctaagcatgcgtttatttaacataacaattaactct 16580260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 215 - 470
Target Start/End: Complemental strand, 16615375 - 16615120
Alignment:
Q  215 ttggattaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattt 314  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  16615375 ttggattaatcaatgattaatttatttagaaacattctgtagtacccttcctaaatcctttatttgctttgttgaaaattgtaaatttacatattcattt 16615276  T
Q  315 tttacatcttctaacaatctcactctgtcttcgattcttatagtcttcagtttttaagttttctttcatttgaatcatcatattcaattgaggacatctc 414  Q
    | | |||||||||||||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  16615275 tatgcatcttctaacaatctcactctgtcttcgattcttacagtcctcaattattatgttttctttcatttgaatcatcatattcacttgagtacatctc 16615176  T
Q  415 ttttgtaatttgttgctaatctaagcatgcgtttatttaacgtaacaattaactct 470  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  16615175 ttttgtaatttgttgctaagctaagcatgcgtttatttaacataacaattaactct 16615120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 16783533 - 16783416
Alignment:
Q  216 tggattaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcatttt 315  Q
    |||||||||| |||||| |||||| |||||||||||||||||| ||||||||||| | |||| || |||| |||| ||||||||||| ||||||| ||||    
T  16783533 tggattaatcaatgctttatttctctagaaacattctgtagtatccttcctaaat-cattatttgatttgatgaaaattgtaaatttgcagattcctttt 16783435  T
Q  316 ttacatcttctaacaatct 334  Q
    ||  |||| ||||||||||    
T  16783434 ttgtatctgctaacaatct 16783416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 16978013 - 16977898
Alignment:
Q  247 cattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattttttacatcttctaacaatctcactctgtcttc 346  Q
    |||| ||||||| |||||| ||||||||| |||| ||||||||| |||| |||||| ||||||||||||||  |||||||| |||| ||||| ||||||     
T  16978013 cattttgtagtatccttccgaaatcctttgtatgatttgttgaaaattgaaaatttgcagattcattttttgtatcttctagcaatatcactttgtcttg 16977914  T
Q  347 gattcttatagtcttc 362  Q
    ||| ||| ||||||||    
T  16977913 gatgcttctagtcttc 16977898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 16873805 - 16873858
Alignment:
Q  22 tgcagattaggcacattatttctctttacatggtttatcagttttgaacagaaa 75  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16873805 tgcagtttaggcacattatttctctttacatggttgatcagttttgaacagaaa 16873858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 16783829 - 16783756
Alignment:
Q  68 aacagaaatctgatttgaatattagttgcatatttccctgttctcttttctgctgaattaattacatttgaaat 141  Q
    ||||||||| |||||||| ||||   |||||||| | ||||| ||||| ||| |||||||||||||||||||||    
T  16783829 aacagaaatttgatttgattattgcctgcatattgctctgttatctttgctgttgaattaattacatttgaaat 16783756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 16832479 - 16832438
Alignment:
Q  60 cagttttgaacagaaatctgatttgaatattagttgcatatt 101  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  16832479 cagttatgaacagaaatttgatttgattattagttgcatatt 16832438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 11913 - 11460
Alignment:
Q  22 tgcagattaggcacattatttctctttacatggtttatcagttttgaacagaaatctgatttgaatattagttgcatatttccctgttctcttttctgct 121  Q
    ||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||    
T  11913 tgcagtttaggcacattattactctttacacggttgatcagttttgaacagaaatttgatttgaatattaactgcatattgccctgttctcttttctgct 11814  T
Q  122 gaattaattacatttgaaatttggtcaatgctctgtattttatgtgatta-------cattatgcgttaaacatcacaaaggcatgaacaccttgttcgt 214  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||| |    
T  11813 gaatcaattacatttgaaattttgtcaatgctttgtattttatgtgattagtgattacattatgcgttaaacatcacaaaggcttgaacaccttgttcct 11714  T
Q  215 ttggattaatccatgcttaatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattt 314  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11713 ttggattaatcaatgcttgatttctttagaaacattctgtagtacccttcctaaatcctttatatgctttgatgaaaattgtaaatttacagattcattt 11614  T
Q  315 tttacatcttctaacaatctcactctgtcttcgattcttatagtcttcagtttttaagttttctttcatttgaatcatcatattcaattgaggacatctc 414  Q
    ||  ||||||||||||||||||  ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    
T  11613 ttagcatcttctaacaatctca--ctgtcttcgattcttatagtcttcaattattaagttttctttcatttgaatcatcatattcaattgagtacatctc 11516  T
Q  415 ttttgtaatttgttgctaatctaagcatgcgtttatttaacgtaacaattaactct 470  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  11515 ttttgtaattcgttgctaacctaagcatgcgtttatttaacataacaattaactct 11460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 32792500 - 32792574
Alignment:
Q  262 ttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattttttacatcttctaacaatctca 336  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||||||| ||||||||    
T  32792500 ttcctaaatcctttatatgatttgttgaatattgtaaatttgcagattcattttttgtatcttctagcaatctca 32792574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 21628765 - 21628865
Alignment:
Q  262 ttcctaaatccttt-atatgctttgttgaatattgtaaatttacagattcattttttacatcttctaacaatctcactctgtcttcgattcttatagtct 360  Q
    |||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||| |||||| | |||||||||| |||||| ||| ||| ||||||    
T  21628765 ttcctaaatccttttatatgatttgttgaatattgtaaatttgtagattcattttttatatcttccagcaatctcactttgtcttggatgcttctagtct 21628864  T
Q  361 t 361  Q
    |    
T  21628865 t 21628865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 14535925 - 14536036
Alignment:
Q  249 ttctgtagtacccttcctaaatcctttatatgctttgttgaatattgtaaatttacagattcattttttacatcttctaacaatctcactctgtcttcga 348  Q
    |||||||||| ||||||| ||||||||||||| ||||||||| |||||||| ||  || |||| ||||| |||||||  ||||||||||| |||||| ||    
T  14535925 ttctgtagtatccttcctgaatcctttatatgatttgttgaa-attgtaaactt--agtttcaatttttgcatcttcacacaatctcactttgtcttgga 14536021  T
Q  349 ttcttatagtcttca 363  Q
    | ||| |||||||||    
T  14536022 tgcttctagtcttca 14536036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 32792071 - 32792143
Alignment:
Q  140 atttggtcaatgctctgtattttatgtgattacattatgcgttaaacatcacaaaggcatgaacaccttgttc 212  Q
    |||| ||||||| | |||||||||||||| |||| |||||||||||||||||| | || |||||||| |||||    
T  32792071 attttgtcaatgttatgtattttatgtgagtacaatatgcgttaaacatcacacatgcttgaacaccgtgttc 32792143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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