View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11455_low_14 (Length: 453)

Name: NF11455_low_14
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11455_low_14
NF11455_low_14
[»] chr7 (17 HSPs)
chr7 (12-347)||(19509197-19509530)
chr7 (147-285)||(40992738-40992877)
chr7 (147-275)||(2635604-2635733)
chr7 (151-237)||(2399711-2399798)
chr7 (359-435)||(19509080-19509153)
chr7 (145-284)||(12810304-12810443)
chr7 (145-284)||(3094336-3094480)
chr7 (168-238)||(21955376-21955445)
chr7 (151-235)||(13468877-13468962)
chr7 (147-208)||(29229743-29229804)
chr7 (151-243)||(34670364-34670457)
chr7 (170-238)||(15996147-15996215)
chr7 (185-237)||(36720211-36720263)
chr7 (168-238)||(23097542-23097612)
chr7 (287-344)||(30965783-30965840)
chr7 (145-208)||(35985265-35985329)
chr7 (145-208)||(36006673-36006737)
[»] chr1 (19 HSPs)
chr1 (154-284)||(34890200-34890331)
chr1 (151-284)||(24419528-24419662)
chr1 (141-286)||(20814744-20814894)
chr1 (145-284)||(5368780-5368919)
chr1 (151-237)||(8900805-8900892)
chr1 (141-238)||(49166649-49166747)
chr1 (147-238)||(5347003-5347094)
chr1 (151-237)||(5700076-5700163)
chr1 (174-238)||(11900863-11900927)
chr1 (134-238)||(35489191-35489296)
chr1 (151-235)||(41944781-41944866)
chr1 (145-208)||(1609969-1610033)
chr1 (144-198)||(11900909-11900964)
chr1 (180-284)||(15497477-15497578)
chr1 (170-284)||(31032437-31032551)
chr1 (147-268)||(51171263-51171385)
chr1 (147-200)||(28437227-28437280)
chr1 (151-233)||(32804291-32804375)
chr1 (168-232)||(882955-883019)
[»] chr4 (14 HSPs)
chr4 (151-284)||(38562137-38562271)
chr4 (151-236)||(8678986-8679073)
chr4 (147-238)||(6371956-6372048)
chr4 (151-234)||(23673401-23673485)
chr4 (151-251)||(52840279-52840379)
chr4 (139-232)||(17236164-17236255)
chr4 (151-238)||(10065077-10065165)
chr4 (151-278)||(20291793-20291921)
chr4 (151-194)||(33508543-33508587)
chr4 (151-201)||(6371926-6371977)
chr4 (145-238)||(20783730-20783824)
chr4 (151-283)||(30920705-30920838)
chr4 (151-194)||(10065151-10065195)
chr4 (147-194)||(32125423-32125471)
[»] chr5 (12 HSPs)
chr5 (151-268)||(7065596-7065714)
chr5 (168-285)||(5865870-5865987)
chr5 (134-275)||(8355553-8355694)
chr5 (151-238)||(14751166-14751254)
chr5 (145-284)||(28499777-28499916)
chr5 (147-194)||(28351029-28351077)
chr5 (133-226)||(18550970-18551064)
chr5 (184-281)||(25840570-25840668)
chr5 (147-240)||(11089296-11089394)
chr5 (151-198)||(5865922-5865970)
chr5 (146-238)||(20269449-20269541)
chr5 (141-240)||(35463992-35464091)
[»] chr3 (9 HSPs)
chr3 (151-237)||(29212885-29212972)
chr3 (141-194)||(16867619-16867673)
chr3 (151-243)||(18093814-18093907)
chr3 (151-217)||(8266442-8266510)
chr3 (151-233)||(55121185-55121268)
chr3 (145-198)||(27786537-27786591)
chr3 (168-284)||(1779523-1779638)
chr3 (145-284)||(16867613-16867753)
chr3 (170-286)||(19790754-19790870)
[»] chr8 (13 HSPs)
chr8 (147-238)||(40737864-40737955)
chr8 (170-238)||(24185563-24185631)
chr8 (178-238)||(429805-429865)
chr8 (138-285)||(14113211-14113359)
chr8 (147-243)||(44329193-44329291)
chr8 (141-238)||(1784130-1784228)
chr8 (151-238)||(6590794-6590882)
chr8 (168-240)||(18147850-18147922)
chr8 (136-194)||(6590868-6590927)
chr8 (148-194)||(6649158-6649205)
chr8 (151-238)||(42158394-42158480)
chr8 (145-215)||(8168911-8168983)
chr8 (142-237)||(30542503-30542599)
[»] chr6 (11 HSPs)
chr6 (161-237)||(6071902-6071978)
chr6 (170-240)||(31159116-31159186)
chr6 (151-224)||(862877-862950)
chr6 (141-237)||(24252928-24253020)
chr6 (138-235)||(1392485-1392582)
chr6 (146-240)||(29400673-29400766)
chr6 (141-194)||(5069941-5069995)
chr6 (147-191)||(862829-862874)
chr6 (151-198)||(674131-674179)
chr6 (145-208)||(2271196-2271260)
chr6 (216-284)||(5069935-5070003)
[»] chr2 (8 HSPs)
chr2 (154-238)||(43445045-43445129)
chr2 (151-284)||(41517375-41517509)
chr2 (151-226)||(11565012-11565088)
chr2 (147-238)||(14725218-14725310)
chr2 (170-238)||(33956327-33956395)
chr2 (168-233)||(25931618-25931683)
chr2 (168-208)||(644101-644141)
chr2 (170-214)||(43336540-43336584)
[»] scaffold0514 (1 HSPs)
scaffold0514 (145-194)||(5825-5875)
[»] scaffold0777 (1 HSPs)
scaffold0777 (180-234)||(4753-4807)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 19509530 - 19509197
Alignment:
Q  12 gagaagaaacacacaataaatattaagaagtgaaaaattcaaaattagaacccgagatcaaacacttgcggttttcaacccgcgatcatactaataagag 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |    
T  19509530 gagaagaaacacacaataaatattaagaagtggaaaattcaaaattagaacccgagatcaaaaacttgcggttttcaacccgggatcatactaacaagtg 19509431  T
Q  112 tcataaataatttgtttaaacaatattctctctgatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaat 211  Q
    ||||||||| |||||||||| ||||  ||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19509430 tcataaatattttgtttaaagaata--ctctctggtaacatttataagcaaaaaaaactttttaggtacattgaataactaatatatatgacatataaat 19509333  T
Q  212 gtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaatttgatcggagggagtacataaaaagaaaatttatattagaaat 311  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19509332 gtgaccagatacattgattattcaatgaatttaaaatgctgatttttacttacaaatttgatcggagggagtacataaaaagaaaatttatattagaaat 19509233  T
Q  312 ataaatcaaacatatgtcgaagtcataaatacatca 347  Q
    |||||||||||||| |||||||||||| ||||||||    
T  19509232 ataaatcaaacatacgtcgaagtcatatatacatca 19509197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 285
Target Start/End: Original strand, 40992738 - 40992877
Alignment:
Q  147 tcatatttataagcaaaaaa-cactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttga 245  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||| || ||||| ||||||||||||| ||| |||| ||||||||||| |||| |    
T  40992738 tcatatttataagcaaaaaagcaatttttaggtacattaaataattaatgtacatgacttataaatgtgaccagatgcattaattattcaatgtatttaa 40992837  T
Q  246 aatgttgatttttacttacaaatttgatcggagggagtac 285  Q
    || |||| ||||| |||  || | ||||||||||||||||    
T  40992838 aaagttgttttttgcttgtaattgtgatcggagggagtac 40992877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 2635604 - 2635733
Alignment:
Q  147 tcatatttataagcaaaaaacactttt-taggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttga 245  Q
    |||||||||||| ||||| ||| |||| |||||||||| |||||||||| |||  ||||||||||| |||||  |||||||  |||||||||| |||| |    
T  2635604 tcatatttataaacaaaatacatttttttaggtacattaaataactaatgtattcgacatataaatatgaccacatacattagttattcaatgtatttaa 2635703  T
Q  246 aatgttgatttttacttacaaatttgatcg 275  Q
    ||  ||| |||||||||| |||| ||||||    
T  2635704 aaaattgttttttacttataaatatgatcg 2635733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 2399711 - 2399798
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||||||||||||||||| |||| || ||||||||||||  |||| ||| | || |||||||||||||||||||||| ||||||||||    
T  2399711 atttataagcaaaaaacaactttctaagtacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattattcaat 2399798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 19509153 - 19509080
Alignment:
Q  359 atttgttagcctttcttatattaaaaatgtatatttttaaaaataattgcgagtgtgtaaattaacattgggattat 435  Q
    |||||||||||||||| | |||||||||||||  ||||||||  | |||||||||||||||||||||||||||||||    
T  19509153 atttgttagcctttctca-attaaaaatgtat--ttttaaaataatttgcgagtgtgtaaattaacattgggattat 19509080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 12810443 - 12810304
Alignment:
Q  145 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt 243  Q
    ||||| |||| ||||||||| ||| ||||||||||| ||||||||| |||| ||| || | | |||||||||||| ||||||| ||||||||||| || |    
T  12810443 gatcacatttgtaagcaaaacacaactttttaggtatattgaataattaatgtatctggcct-taaatgtgaccgaatacattaattattcaatgtatct 12810345  T
Q  244 gaaatgttgatttttacttacaaatttgatcggagggagta 284  Q
     ||| |||| |||||  ||| |||| |||| ||||||||||    
T  12810344 aaaacgttggtttttggttataaatgtgattggagggagta 12810304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 3094336 - 3094480
Alignment:
Q  145 gatcatatttataagcaaaaaac--actttttaggtacattgaataactaatatatat--gacatataaatgt-gaccggatacattgattattcaatga 239  Q
    ||||||||||||||||||||||   ||||||||||| || |||||||||||||| |||  ||| |||| || | |||| | ||||||  |||||||||||    
T  3094336 gatcatatttataagcaaaaaaacaactttttaggttcactgaataactaatatgtatctgacttatatatatagaccaggtacattagttattcaatga 3094435  T
Q  240 atttgaaatgttgatttttacttacaaatttgatcggagggagta 284  Q
    |  | ||| |||  |||||||||| |||| |||||||||||||||    
T  3094436 accttaaaagttattttttacttataaatgtgatcggagggagta 3094480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 21955445 - 21955376
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||||| |||||||||||| || | ||| ||||||||||||||||| ||||||||| |||||||||||    
T  21955445 actttttagatacattgaataatta-tgtatctgacatataaatgtgactggatacattaattattcaatg 21955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 13468962 - 13468877
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattca 235  Q
    ||||||||| |||||||| ||||| | ||| |||||||||  ||| ||||| || |||||||||||||||||||||| ||||||||    
T  13468962 atttataaggaaaaaacaattttttatgtagattgaataatcaatttatataacctataaatgtgaccggatacatttattattca 13468877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 29229804 - 29229743
Alignment:
Q  147 tcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatata 208  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||| ||| |||| ||||    
T  29229804 tcatatttataagcaaaaacaactttttaggttcattgaataactaatgtatctgacctata 29229743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 34670364 - 34670457
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt 243  Q
    |||||||||||||||||| ||||||||||||||  ||| | |||| ||| | | | |||||||||| |||||||||| ||||||||||| ||||    
T  34670364 atttataagcaaaaaacaactttttaggtacatccaatcattaatgtatctaatacataaatgtgatcggatacattaattattcaatgtattt 34670457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 15996147 - 15996215
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||||| |||| ||| |||| |||||| ||||  ||||||||| |||||||||||    
T  15996147 tttttaggtacattgaataattaatgtatctgacctataaacgtgattggatacattaattattcaatg 15996215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 36720211 - 36720263
Alignment:
Q  185 aataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||||||||| ||||| |||||||||||||| | |||||||| ||||||||||    
T  36720211 aataactaatgtatataacatataaatgtgatcagatacattaattattcaat 36720263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 23097612 - 23097542
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||| ||||||||| |||| ||| | || |||||||||||  ||||||||| ||| |||||||    
T  23097612 actttttaggtagattgaataattaatgtatttaacttataaatgtgatgggatacattaattgttcaatg 23097542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 30965840 - 30965783
Alignment:
Q  287 taaaaagaaaatttatattagaaatataaatcaaacatatgtcgaagtcataaataca 344  Q
    |||||||||| ||||| ||  |||||||||||||||| | || |||||||||||||||    
T  30965840 taaaaagaaattttatcttgaaaatataaatcaaacacacgttgaagtcataaataca 30965783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 35985265 - 35985329
Alignment:
Q  145 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatata 208  Q
    ||||| |||||||||||||| ||| |||||||| |  |||||||||||||| |||||||| ||||    
T  35985265 gatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctata 35985329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 36006673 - 36006737
Alignment:
Q  145 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatata 208  Q
    ||||| |||||||||||||| ||| |||||||| |  |||||||||||||| |||||||| ||||    
T  36006673 gatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctata 36006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 34890200 - 34890331
Alignment:
Q  154 tataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttg 252  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||||| | ||||  |     
T  34890200 tataagcaaaaaacaactttttagatacattgaataactaatatatctaacatataaatgtaaccggatacattaattattcaatgaatctaaaatagta 34890299  T
Q  253 atttttacttacaaatttgatcggagggagta 284  Q
     ||||| |||| |||| | |||||||||||||    
T  34890300 tttttttcttataaatgtaatcggagggagta 34890331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 24419662 - 24419528
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| ||| |||| ||||| | |||| |||||||||  || |||||||||| | ||| |    
T  24419662 atttataagcaaaaaacaactttttaggtacattgaataattaatgtatctgacttataattatgactggatacattagttcttcaatgaatctaaaaag 24419563  T
Q  250 ttgatttttacttacaaatttgatcggagggagta 284  Q
    ||  ||||| |||| |||| ||| |||||||||||    
T  24419562 ttcttttttgcttataaatgtgaccggagggagta 24419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 20814744 - 20814894
Alignment:
Q  141 ctctgatcatatttataagcaaaaaac--actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||||||||||||||| ||||||   ||||||  ||||||||||||||| ||| ||| |||||||||||||||||  |||||||| |||||| ||||    
T  20814744 ctctgatcatatttataagaaaaaaaacaacttttgtggtacattgaataaccaatgtatctgacatataaatgtgacaagatacattaattatttaatg 20814843  T
Q  239 aa---tttgaaatgttgatttttacttacaaatttgatcggagggagtaca 286  Q
    ||   ||| |||  ||| ||||| |||| |||| |||||||| ||||||||    
T  20814844 aatattttaaaaatttgttttttgcttataaatatgatcggaaggagtaca 20814894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 5368780 - 5368919
Alignment:
Q  145 gatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttg 244  Q
    ||||| |||||||||||||||| |  ||||| ||||||  ||||| |||| ||| | ||  ||||||||||||||||||||| ||||||||||| || |     
T  5368780 gatcacatttataagcaaaaaataacttttatgtacatccaataattaatgtatctaacccataaatgtgaccggatacattaattattcaatgcatcta 5368879  T
Q  245 aaatgttgatttttacttacaaatttgatcggagggagta 284  Q
    ||| ||| |||||| |||| |||| ||| |||||||||||    
T  5368880 aaaagttaatttttgcttataaatatgaccggagggagta 5368919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 8900805 - 8900892
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    ||||||||| || ||||| ||||||||||||||||||||| |||| ||| | || |||||||||||||||||||||| ||||||||||    
T  8900805 atttataagtaataaacaactttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaat 8900892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 49166747 - 49166649
Alignment:
Q  141 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||||||||| |||| ||| | || |||||||||||| ||||||||| |||||| ||||    
T  49166747 ctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaatg 49166649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 5347094 - 5347003
Alignment:
Q  147 tcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||| |  |||||  |||||||||| ||||||||||| |||||||| | | ||||||||||||  ||||||||| |||||||||||    
T  5347094 tcatatttattaaaaaaaatgactttttaggaacattgaataattaatatatctaatatataaatgtgaatggatacattaattattcaatg 5347003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 5700163 - 5700076
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||  || |||  ||||||| ||| |||||||||| ||||||||||    
T  5700163 atttataagcaaaaaacaactttttaagtacattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaat 5700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 11900863 - 11900927
Alignment:
Q  174 taggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||| |||| ||| |||| ||||||||||||| |||| ||| |||||||||||    
T  11900863 taggtacattgaataattaatgtatttgacctataaatgtgaccagatatattaattattcaatg 11900927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 35489191 - 35489296
Alignment:
Q  134 atattctctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattat 232  Q
    |||||| ||| | ||| |||||||| ||||||||| |||||||| |||||||||||| |||| ||| | || ||||||| | ||| ||| |||| |||||    
T  35489191 atattccctccggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtatctaacctataaatatcaccagattcattaattat 35489290  T
Q  233 tcaatg 238  Q
    ||||||    
T  35489291 tcaatg 35489296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 41944781 - 41944866
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattca 235  Q
    |||||||||||||||||| ||||||||||| ||  ||||| |||| ||| | ||  |||||||||||||| |||||| ||||||||    
T  41944781 atttataagcaaaaaacaactttttaggtatatccaataattaatgtatctaacccataaatgtgaccgggtacattaattattca 41944866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 1609969 - 1610033
Alignment:
Q  145 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatata 208  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||| |||| ||| |||| ||||    
T  1609969 gatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatctgacctata 1610033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 11900964 - 11900909
Alignment:
Q  144 tgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatat 198  Q
    ||||||||||||||| |||||| || |||||||| |||||||||||| ||||||||    
T  11900964 tgatcatatttataaacaaaaaccaactttttagatacattgaataattaatatat 11900909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 15497578 - 15497477
Alignment:
Q  180 cattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaatttgatcggagg 279  Q
    ||||||||||||||| ||||||||||||| |   |||||||||||||  ||| | ||| ||| | ||| ||||||||||  ||| |||| |||||||||     
T  15497578 cattgaataactaatgtatatgacatatata---gaccggatacattacttagttaataaatctaaaaagttgatttttgtttataaatgtgatcggaga 15497482  T
Q  280 gagta 284  Q
    |||||    
T  15497481 gagta 15497477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 31032551 - 31032437
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaatt 269  Q
    ||||||||| |||| |||||||||| ||| ||   ||||||||||||  |||||||| ||||||  |||||| | ||| |||| ||||| ||||  |||     
T  31032551 tttttaggttcattaaataactaatgtatttggtctataaatgtgactagatacattaattatttcatgaatctaaaaagttgttttttgcttattaatg 31032452  T
Q  270 tgatcggagggagta 284  Q
    ||| |||||||||||    
T  31032451 tgaccggagggagta 31032437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 51171263 - 51171385
Alignment:
Q  147 tcatatttataagcaaaaaac-actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttga 245  Q
    ||||||||||||||||||||| |||||||||||| |||| |||| ||||  || |||| ||||| | ||||  | ||||||  ||||| |||||| || |    
T  51171263 tcatatttataagcaaaaaacaactttttaggtatattgtataattaattaatctgacctataattatgacacggtacattagttatttaatgaacttaa 51171362  T
Q  246 aatgttgatttttacttacaaat 268  Q
    || |||  |||||||||| ||||    
T  51171363 aaagttattttttacttataaat 51171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 28437227 - 28437280
Alignment:
Q  147 tcatatttataagcaaaaaacactttttaggtacattgaataactaatatatat 200  Q
    |||||||||||||||||||  ||||| ||||   ||||||||||||||||||||    
T  28437227 tcatatttataagcaaaaataactttataggcttattgaataactaatatatat 28437280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 32804375 - 32804291
Alignment:
Q  151 atttataagcaaaaaacacttttt--aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattatt 233  Q
    ||||||||| |||||||| |||||  ||||||||||||| | |||| ||| |  |||||||||||||| | ||||||| ||||||    
T  32804375 atttataagtaaaaaacagtttttttaggtacattgaatcattaatgtatctatcatataaatgtgactgaatacattaattatt 32804291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 882955 - 883019
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattat 232  Q
    ||||||||||| ||||||||||||||| ||| | | |||||||||||| |  ||||||| |||||    
T  882955 actttttaggttcattgaataactaatgtatttaatatataaatgtgatcaaatacattaattat 883019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 38562137 - 38562271
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    |||||||||||||||||| ||| |||| |||||||||||| |||| |||||| | |||||||||||||||||||||| ||||||||||| || | |||      
T  38562137 atttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattattcaatgtatctaaaaaa 38562236  T
Q  250 ttgatttttacttacaaatttgatcggagggagta 284  Q
    ||| ||||| |||| |||| ||| |||||||||||    
T  38562237 ttgttttttgcttataaatgtgaccggagggagta 38562271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 8679073 - 8678986
Alignment:
Q  151 atttataagcaaaaaac--actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaa 236  Q
    ||||||||||||||||   | ||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||| |||||||||    
T  8679073 atttataagcaaaaaaataattttttaggtacattgaatacctaatgtatctaacatataaatgtgaccggatacattaattattcaa 8678986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 6372048 - 6371956
Alignment:
Q  147 tcatatttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| | ||  |||||||| |||  ||||||| |||||||||||    
T  6372048 tcatatttataagcaaaaaacaattttttaggtacatttaataactaatgtatctaacccataaatgtaaccatatacattaattattcaatg 6371956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 23673485 - 23673401
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattc 234  Q
    |||||||||||||||| | ||||||||||| ||||||||| |||| ||| ||||||||| ||||||||  ||||||| |||||||    
T  23673485 atttataagcaaaaaataactttttaggtatattgaataattaatgtatctgacatatatatgtgaccaaatacattaattattc 23673401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 52840279 - 52840379
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    |||||||||||||||| | ||||| | ||||||| ||||| |||| ||| | |||||||||||||||| |||||||| |||||| ||||||| | |||||    
T  52840279 atttataagcaaaaaataattttttaagtacattaaataattaatgtatctaacatataaatgtgacc-gatacattaattatttaatgaatctaaaatg 52840377  T
Q  250 tt 251  Q
    ||    
T  52840378 tt 52840379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 17236255 - 17236164
Alignment:
Q  139 ctctctgatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattat 232  Q
    ||||| ||||| |||||||| ||||||  | ||||||||||  |||||||| |||| ||| | || |||||||||||||||||||||| |||||    
T  17236255 ctctccgatcacatttataaacaaaaacaattttttaggta--ttgaataattaatgtatttaacctataaatgtgaccggatacattaattat 17236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 10065077 - 10065165
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||| ||||||||||||||  ||||| |||| ||| | ||  |||||| ||  |||||||||| |||||||||||    
T  10065077 atttataagcaaaaaacaactttttaggtacatccaataattaatgtatctaactcataaatatggtcggatacattaattattcaatg 10065165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 20291793 - 20291921
Alignment:
Q  151 atttataagcaaaaaac-actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    ||||||||||||||||| |||||||| ||| ||| |||||||||| ||| |||  ||||| |  ||| |||||||||  ||||||||| ||| | ||| |    
T  20291793 atttataagcaaaaaacaactttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatctaaaaag 20291892  T
Q  250 ttgatttttacttacaaatttgatcggag 278  Q
    ||  ||||| |||| |||| |||||||||    
T  20291893 ttattttttgcttataaatatgatcggag 20291921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 33508543 - 33508587
Alignment:
Q  151 atttataagcaaaaaacactttt-taggtacattgaataactaat 194  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  33508543 atttataagcaaaaaacaattttttaggtacattgaataactaat 33508587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 6371926 - 6371977
Alignment:
Q  151 atttataagcaaaaaac-actttttaggtacattgaataactaatatatatg 201  Q
    ||||||||||||||||  |||||||||||||||||||||| |||| ||||||    
T  6371926 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatatg 6371977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 20783824 - 20783730
Alignment:
Q  145 gatcatatttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||||||||||| |||||| | ||||| ||||||||  ||||| |||| ||| | | | |||||||||| | |||||||| |||||||||||    
T  20783824 gatcatatttataagtaaaaaataattttttaggtacatccaataattaatgtatttaatacataaatgtgatcagatacattaattattcaatg 20783730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 30920838 - 30920705
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    |||||||||||||||| | ||||| | ||  |||||||||||||||||| | |  ||||| | ||| |||||||||| |||||||||| || || ||| |    
T  30920838 atttataagcaaaaaataattttttaagtttattgaataactaatatattttatctataattatgatcggatacattaattattcaataaacttaaaaag 30920739  T
Q  250 ttgatttttacttacaaatttgatcggagggagt 283  Q
    ||| ||| || ||| |||  ||| ||||||||||    
T  30920738 ttgttttatatttataaaagtgaccggagggagt 30920705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 10065195 - 10065151
Alignment:
Q  151 atttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||    
T  10065195 atttataagcaaaaaatgactttttaggtacattgaataattaat 10065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 32125471 - 32125423
Alignment:
Q  147 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    ||||||||||||||||||| | ||||||||||| ||||||||| |||||    
T  32125471 tcatatttataagcaaaaatctactttttaggttcattgaatatctaat 32125423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 7065596 - 7065714
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    |||||||| ||||||| | |||||||| |||||||||||||||||  ||  ||||||||||||||| | |||||||| |||||||||||||||| ||| |    
T  7065596 atttataaacaaaaaagaactttttagatacattgaataactaatgcatcagacatataaatgtgatcagatacattaattattcaatgaatttaaaaag 7065695  T
Q  250 ttgatttttacttacaaat 268  Q
    ||||||||| |||| ||||    
T  7065696 ttgatttttgcttataaat 7065714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 5865870 - 5865987
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaa 267  Q
    |||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||  |||||||||||||  | |||   || ||||| |||| |||    
T  5865870 actttttaggtacatttaataactaatgtatctaacatataaatgtgaccggatatatcaattattcaatgaacctaaaaatgtgttttttgcttataaa 5865969  T
Q  268 tttgatcggagggagtac 285  Q
    | ||| ||||||||||||    
T  5865970 tgtgaccggagggagtac 5865987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 8355694 - 8355553
Alignment:
Q  134 atattctctctgatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattatt 233  Q
    |||||||||| ||| ||||||||||| |||||  ||||||||  |||| ||||||| |||| |||   |||||||||||||| |||||||||| ||||||    
T  8355694 atattctctccgattatatttataagaaaaaacaactttttaaatacaatgaataattaatgtatccaacatataaatgtgatcggatacattaattatt 8355595  T
Q  234 caatgaatttgaaatgttgatttttacttacaaatttgatcg 275  Q
     |||  |||| |||| |  ||||||||||| |||| ||||||    
T  8355594 taatatatttaaaatatcaatttttacttataaatgtgatcg 8355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 14751254 - 14751166
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||| ||||||||||||||||||||  | || ||| | || ||||||||| || ||||||||| |||||||||||    
T  14751254 atttataagcaaaaaacaactttttaggtacattgaatagttgatgtatctaacctataaatgtaactggatacattaattattcaatg 14751166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 28499916 - 28499777
Alignment:
Q  145 gatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttg 244  Q
    ||||| ||||||||| |||||  ||||||||| || ||||||||| |||| ||| | |  ||||| | ||||||||||||||  ||||||||||||| |     
T  28499916 gatcacatttataagaaaaaataactttttagatatattgaataattaatgtatttaatctataattatgaccggatacattagttattcaatgaatcta 28499817  T
Q  245 aaatgttgatttttacttacaaatttgatcggagggagta 284  Q
    |||  ||  ||||| |||| |||| ||| |||||||||||    
T  28499816 aaaaattattttttgcttataaatgtgaccggagggagta 28499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 28351077 - 28351029
Alignment:
Q  147 tcatatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  28351077 tcatatttataagcaaaaaacaactttttagattcattgaataactaat 28351029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 18550970 - 18551064
Alignment:
Q  133 aatattctctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacatt 226  Q
    ||||||| ||||| ||| |||||||||||||| || ||| ||||| | ||||||||||||||| ||| |||  || ||||||||||  |||||||    
T  18550970 aatattccctctggtcacatttataagcaaaacacaactgtttagattcattgaataactaatgtatttgatctacaaatgtgaccaaatacatt 18551064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 25840668 - 25840570
Alignment:
Q  184 gaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt-gaaatgttgatttttacttacaaatttgatcggaggga 281  Q
    ||||||||||| ||  |||  |||||||||||||  |||||||  |||||||||||||||  |||  ||| |||||||||| |||| ||||||||||||    
T  25840668 gaataactaatgtagttgatctataaatgtgaccaaatacattacttattcaatgaatttaaaaaaattgttttttacttataaatgtgatcggaggga 25840570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 11089296 - 11089394
Alignment:
Q  147 tcatatttataagcaaaaaacacttttt-aggtacattgaataa----ctaatatatatgacatataaatgtgaccggatacattgattattcaatgaa 240  Q
    |||||||||||| ||||||| | ||||| || ||||||||||||    ||||| ||| | ||||||||||||||||||| | ||| ||||||| |||||    
T  11089296 tcatatttataatcaaaaaataattttttagatacattgaataattaactaatgtatctaacatataaatgtgaccggaaatattaattattcgatgaa 11089394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 5865970 - 5865922
Alignment:
Q  151 atttataagcaaaaaacac-tttttaggtacattgaataactaatatat 198  Q
    ||||||||||||||||||| ||||||||| |||||||||| | ||||||    
T  5865970 atttataagcaaaaaacacatttttaggttcattgaataattgatatat 5865922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 20269449 - 20269541
Alignment:
Q  146 atcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||| |||||  ||||||||| || ||||||||| | || ||| |||| || |||| ||||   ||||||| |||||||||||    
T  20269449 atcatatttataagaaaaaacaactttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatg 20269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 35464091 - 35463992
Alignment:
Q  141 ctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatga 239  Q
    |||| |||||||||||||||||||  | ||||||||||| | |||| || ||||| ||| | ||||||| ||  |||||||||||||  |||||||||||    
T  35464091 ctcttatcatatttataagcaaaaggcaactttttaggttctttgagtagctaatgtatctaacatatatat-agaccggatacattagttattcaatga 35463993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 29212972 - 29212885
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||||||||||||||||  ||||| ||||||||||||||| |||| ||| |||| |||||||||||| ||||||||||||||||||||    
T  29212972 atttataagcaaaaaactgttttttaggtacattgaataattaatgtatctgacctataaatgtgactggatacattgattattcaat 29212885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 16867619 - 16867673
Alignment:
Q  141 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaat 194  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  16867619 ctctggtcacatttataagcaaaaaacaactttttaggtacattgaataactaat 16867673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 18093907 - 18093814
Alignment:
Q  151 atttataagcaaaaaacac-tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt 243  Q
    |||||||||||| |||||  |||||||||  ||||||||| |||| ||| |||| ||||||||||||  |||||||| ||||||||||| ||||    
T  18093907 atttataagcaataaacaagtttttaggtttattgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaatgtattt 18093814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 8266442 - 8266510
Alignment:
Q  151 atttataagcaaaaaac--actttttaggtacattgaataactaatatatatgacatataaatgtgacc 217  Q
    ||||||||||||||||   | |||||||||||||||||||||| || |||  |||||||||||||||||    
T  8266442 atttataagcaaaaaaacaattttttaggtacattgaataacttatgtattagacatataaatgtgacc 8266510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 55121185 - 55121268
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattatt 233  Q
    |||||||| ||||||||| ||||| |||| ||||||||||||||| ||| ||   |||||||||||||  ||||||| ||||||    
T  55121185 atttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttataaatgtgaccaaatacattaattatt 55121268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 27786591 - 27786537
Alignment:
Q  145 gatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatat 198  Q
    ||||| |||||||||||||| ||| |||||||||| ||||||||| |||||||||    
T  27786591 gatcacatttataagcaaaacacaactttttaggttcattgaatacctaatatat 27786537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 1779523 - 1779638
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaa 267  Q
    |||||||||||||||||||||| | || ||| |||| | |||||||||||  ||  ||| ||||||||||| || | ||| |||| |||||  ||| | |    
T  1779523 actttttaggtacattgaataattgatgtatttgacct-taaatgtgaccttattgattaattattcaatgtatctaaaaagttggtttttgtttatata 1779621  T
Q  268 tttgatcggagggagta 284  Q
    | |||||||||||||||    
T  1779622 tgtgatcggagggagta 1779638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 16867753 - 16867613
Alignment:
Q  145 gatcatatttataagcaaaaaac-actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt 243  Q
    ||||| ||||||||||||||||| |||||||||||||||  ||||| | || ||| | ||  |||||| |||||| || ||||  |||||||||| |  |    
T  16867753 gatcacatttataagcaaaaaacaactttttaggtacatccaataattgatgtatctaacccataaatatgaccgaatgcattagttattcaatgtacct 16867654  T
Q  244 gaaatgttgatttttacttacaaatttgatcggagggagta 284  Q
     ||| |||| ||||| |||| |||| ||| | |||||||||    
T  16867653 aaaaagttgttttttgcttataaatgtgaccagagggagta 16867613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 19790754 - 19790870
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaatt 269  Q
    |||||||||||||||||||| |||| ||  | || |||||||||||  | ||||||  | ||||||||| || | |||   || |||||||||| ||||     
T  19790754 tttttaggtacattgaataattaatgtaccttacctataaatgtgattgcatacatcaagtattcaatgtatctaaaaaagtgttttttacttataaatg 19790853  T
Q  270 tgatcggagggagtaca 286  Q
    ||| |||||||||||||    
T  19790854 tgaccggagggagtaca 19790870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 40737955 - 40737864
Alignment:
Q  147 tcatatttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| |||| ||| |||| | |||||||||||||||||||| |||||||||||    
T  40737955 tcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatctgacct-taaatgtgaccggatacattaattattcaatg 40737864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 24185563 - 24185631
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||| |||||||||||| |||||||| | || |||||||||||| ||||||||| |||||||||||    
T  24185563 tttttagatacattgaataattaatatatctaacctataaatgtgactggatacattaattattcaatg 24185631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 429805 - 429865
Alignment:
Q  178 tacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||| | |||||||| |||| |||||||||||| | |||||||||||||||||||    
T  429805 tacattgaattattaatatatttgacctataaatgtgactgaatacattgattattcaatg 429865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 14113211 - 14113359
Alignment:
Q  138 tctctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaa 236  Q
    |||||| | ||| |||| ||||||||||| | ||||||||||||||  ||||| |||| ||| | ||  ||||||||||||| ||||||| |||||||||    
T  14113211 tctctccggtcacatttctaagcaaaaaataactttttaggtacatccaataattaatgtatctaacccataaatgtgaccgtatacattaattattcaa 14113310  T
Q  237 tgaatttgaaatgttgatttttacttacaaatttgatcggagggagtac 285  Q
    || || | ||| ||   |||||||||| |||| ||| || |||||||||    
T  14113311 tgtatctaaaaagtcattttttacttagaaatatgaccgaagggagtac 14113359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 44329291 - 44329193
Alignment:
Q  147 tcatatttataagcaaaaaac--actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaattt 243  Q
    ||||||||||||||||||||   |||||||||||||||  ||||| |||| ||| | ||  ||||||||||||  ||||||| ||||||||||| ||||    
T  44329291 tcatatttataagcaaaaaaacaactttttaggtacatccaataattaatgtatctaacccataaatgtgaccaaatacattaattattcaatgtattt 44329193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 1784228 - 1784130
Alignment:
Q  141 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||  ||||| |||| ||| | ||  |||||| |||||||||||||| | |||||||||    
T  1784228 ctctggtcacatttataagcaaaaaacaactttttagatacatctaataattaatgtatctaacccataaatatgaccggatacattaaatattcaatg 1784130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 6590794 - 6590882
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||||||||| ||| ||||||||||  |||||  ||| ||| | ||  |||||| |||||||||||||| |||||||||||    
T  6590794 atttataagcaaaaaacaacttcttaggtacatccaataatcaatgtatctaacccataaatatgaccggatacattaattattcaatg 6590882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 18147922 - 18147850
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaa 240  Q
    |||||||||||| ||||||||||| || ||| |||| ||||| | |||| |||||||||  ||||||||||||    
T  18147922 actttttaggtatattgaataactcatgtatctgacctataattatgactggatacattagttattcaatgaa 18147850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 6590927 - 6590868
Alignment:
Q  136 attctctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    |||| ||||| ||| ||||||||||||||||  |||||||||||||||||||||| ||||    
T  6590927 attccctctggtcacatttataagcaaaaaattactttttaggtacattgaataattaat 6590868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 6649205 - 6649158
Alignment:
Q  148 catatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  6649205 catatttataagcaaaaaatgactttttaggtacattgaataattaat 6649158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 42158394 - 42158480
Alignment:
Q  151 atttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||||| |||||  |||||||||||||||  ||||| |||| ||| | ||  ||||||||||| ||||||||| |||||||||||    
T  42158394 atttataagaaaaaacaactttttaggtacatccaataa-taatgtatctaactcataaatgtgactggatacattaattattcaatg 42158480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 8168911 - 8168983
Alignment:
Q  145 gatcatatttataagc-aaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtga 215  Q
    |||||||||||||||| ||||||||  |||||| ||||||||||||| |||| ||| |||  |||||||||||    
T  8168911 gatcatatttataagcaaaaaaacagttttttatgtacattgaataattaatgtatctgatctataaatgtga 8168983  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 30542599 - 30542503
Alignment:
Q  142 tctgatcatatttataagcaaaaaacacttttt-aggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||| ||||||||||||  |||||||| ||||| | ||||||||||||| |||||||| | || | ||||||| |||  ||| ||| ||||||||||    
T  30542599 tctggtcatatttataaataaaaaacaattttttaagtacattgaataattaatatatttaacctttaaatgtaaccaaatatattaattattcaat 30542503  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 6071902 - 6071978
Alignment:
Q  161 aaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    |||||| |||||||| ||||||| |||||||||||||| ||| |||||||| |||||| ||||||| ||||||||||    
T  6071902 aaaaaaaactttttaagtacattaaataactaatatatctgagatataaatatgaccgaatacattaattattcaat 6071978  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 31159186 - 31159116
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaa 240  Q
    |||||| ||| |||||||||||||| ||| | ||||||||||||||||| ||||||| |||||||||||||    
T  31159186 tttttaagtatattgaataactaatgtatctaacatataaatgtgaccgaatacattaattattcaatgaa 31159116  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 862950 - 862877
Alignment:
Q  151 atttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggataca 224  Q
    |||||||||||||||||| ||||||| |||||||||||| |||| ||| | || |||||||||||| |||||||    
T  862950 atttataagcaaaaaacattttttagatacattgaataattaatgtatctaacctataaatgtgactggataca 862877  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 24253020 - 24252928
Alignment:
Q  141 ctctgatcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaat 237  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||||| |||| |||      |||||||||||||| ||||||| ||||||||||    
T  24253020 ctctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtat-----ctataaatgtgaccgaatacattaattattcaat 24252928  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 1392582 - 1392485
Alignment:
Q  138 tctctctgatcatatttataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattca 235  Q
    ||||||| |||| |||||||||||||||  | || |||  ||||| ||||||||||| ||| ||||||||||||||||  ||||| ||| ||||||||    
T  1392582 tctctcttatcacatttataagcaaaaacaatttgttaaatacatcgaataactaatgtatctgacatataaatgtgattggatatattaattattca 1392485  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 29400673 - 29400766
Alignment:
Q  146 atcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaa 240  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||||  ||| |||  |||||||||||| | ||||||| ||| |||||||||    
T  29400673 atcatatttataaacaaaaaacaactttttaagtacattgaataactaa-gtatctgatctataaatgtgactgaatacattaatt-ttcaatgaa 29400766  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 5069941 - 5069995
Alignment:
Q  141 ctctgatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||    
T  5069941 ctctgatcacatttataagcaaaaaacaactttttagatacattgaataattaat 5069995  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 862829 - 862874
Alignment:
Q  147 tcatatttataagcaaaaaac-actttttaggtacattgaataact 191  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  862829 tcatatttataagcaaaaattgactttttaggtacattgaataact 862874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 674179 - 674131
Alignment:
Q  151 atttataagcaaaaaacacttttt-aggtacattgaataactaatatat 198  Q
    |||||||||||||||||| ||||| || | |||||||||||||||||||    
T  674179 atttataagcaaaaaacaattttttagattcattgaataactaatatat 674131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 2271260 - 2271196
Alignment:
Q  145 gatcatatttataagcaaaaaa-cactttttaggtacattgaataactaatatatatgacatata 208  Q
    ||||| ||||||||||||||||  ||||||||| | ||||||| ||||||| ||| |||||||||    
T  2271260 gatcacatttataagcaaaaaataactttttagattcattgaacaactaatgtatttgacatata 2271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 5070003 - 5069935
Alignment:
Q  216 ccggatacattgattattcaatgaatttgaaatgttgatttttacttacaaatttgatcggagggagta 284  Q
    ||||||||||| ||||||||||| || | ||| |||| ||||| |||| |||| ||||| |||||||||    
T  5070003 ccggatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcagagggagta 5069935  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 43445045 - 43445129
Alignment:
Q  154 tataagcaaaaaacactttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||||||||  |||||||||||| ||| ||||| |||| ||| | ||  ||||||||||||||||||||| |||||||||||    
T  43445045 tataagcaaaaacaactttttaggtatattcaataattaatgtatctaacccataaatgtgaccggatacattaattattcaatg 43445129  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 41517375 - 41517509
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatgaatttgaaatg 249  Q
    ||||||||||||||| || ||||||||||||||  || || |||| ||| | ||  |||||||||| |||||||||| ||||||||||| | || ||| |    
T  41517375 atttataagcaaaaaccaactttttaggtacatccaagaattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtacttaaaaag 41517474  T
Q  250 ttgatttttacttacaaatttgatcggagggagta 284  Q
    ||  ||||| |||| |||| ||| |||||||||||    
T  41517475 ttattttttgcttataaatgtgaccggagggagta 41517509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 11565012 - 11565088
Alignment:
Q  151 atttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacatt 226  Q
    |||||||||||||||||| | |||||| |||||||||||| |||| ||  |||  |||||||||||| |||||||||    
T  11565012 atttataagcaaaaaacaacattttagatacattgaataattaatgtacctgatctataaatgtgactggatacatt 11565088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 14725218 - 14725310
Alignment:
Q  147 tcatatttataagcaaaaaaca-ctttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    |||||||||||| ||||||||| |||||||| |||||  ||||| |||| ||| | ||  |||||| ||| |||||||||| |||||||||||    
T  14725218 tcatatttataaacaaaaaacaactttttagatacatctaataattaatgtatctaactcataaatctgatcggatacattaattattcaatg 14725310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 33956395 - 33956327
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattattcaatg 238  Q
    ||||||| || ||||||||| |||| ||| | || ||||||| |||||||||||||| |||||||||||    
T  33956395 tttttagatatattgaataattaatgtatctaacttataaatatgaccggatacattaattattcaatg 33956327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 25931683 - 25931618
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatataaatgtgaccggatacattgattatt 233  Q
    ||||||||||| ||||||||||| ||| ||| |||  |||||||||||||  ||||||| ||||||    
T  25931683 actttttaggttcattgaataaccaatgtatttgatctataaatgtgaccaaatacattaattatt 25931618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 644141 - 644101
Alignment:
Q  168 actttttaggtacattgaataactaatatatatgacatata 208  Q
    ||||||||||| ||||||||||||||| |||||||| ||||    
T  644141 actttttaggttcattgaataactaatgtatatgacctata 644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 43336584 - 43336540
Alignment:
Q  170 tttttaggtacattgaataactaatatatatgacatataaatgtg 214  Q
    ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  43336584 tttttagatacattgaataactaatgtatttgacctataaatgtg 43336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 5825 - 5875
Alignment:
Q  145 gatcatatttataagcaaaaaac-actttttaggtacattgaataactaat 194  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||    
T  5825 gatcacatttataagcaaaaaatgactttttaggtacattgaataactaat 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 4753 - 4807
Alignment:
Q  180 cattgaataactaatatatatgacatataaatgtgaccggatacattgattattc 234  Q
    ||||||||||||||| ||| ||| |||||||||||||  |||||||| |||||||    
T  4753 cattgaataactaatgtatttgatatataaatgtgactagatacattaattattc 4807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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