View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_15 (Length: 449)
Name: NF11455_low_15
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 45381423 - 45381860
Alignment:
| Q |
1 |
aagggaattggaatgtgagcaatgcaaagaaggaaaatatgatcaactcaaggaaggttttggaggtgaattttaattcctctcatcaaaacaatgacac |
100 |
Q |
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| T |
45381423 |
aagggaattggaatgtgagcaatgcaaagaaggaaaatatgatcaactcaaggaaggttttggaggtgaattttaattcctctcatcaaaacaatgacac |
45381522 |
T |
|
| Q |
101 |
attgaacaaccacaacaaacgaagattttcattggtgattacaaattctaatcatggtagtacttttcataaagtggacacaattaatggaactaaggtg |
200 |
Q |
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| T |
45381523 |
attgaacaaccacaacaaacgaagattttcattggtgattacaaattctaatcatggtagtacttttcataaagtggacacaattaatggaactaaggtg |
45381622 |
T |
|
| Q |
201 |
aatggtttacaagtggtagaggctcctaaaaaattgctaaat---gaaaatacaacagatgttgctcttgttaccaatgggagatttgttgaaggaaggt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45381623 |
aatggtttacaagtggtagaggctcctaaaaaattgctaaatgaagaaaatacaacagatgttgctcttgttaccaatgggagatttgttgaaggaaggt |
45381722 |
T |
|
| Q |
298 |
ttgtgtttaggcaaatttttgttattaggtcctatgaaattggtccagatagaactgctaccatggagacactcatgaattttcttcaggttagcttcat |
397 |
Q |
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| T |
45381723 |
ttgtgtttaggcagatttttgttattaggtcctatgaaattggtccagatagaactgctaccatggagacactcatgaattttcttcaggttagcttcat |
45381822 |
T |
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| Q |
398 |
agttttagtaccaacattaatgtctacaacaatattca |
435 |
Q |
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| T |
45381823 |
agttttagtaccaacattaatgtctacaacaatattca |
45381860 |
T |
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