View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11455_low_16 (Length: 395)

Name: NF11455_low_16
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11455_low_16
NF11455_low_16
[»] chr2 (2 HSPs)
chr2 (7-72)||(2348075-2348140)
chr2 (7-70)||(2340203-2340266)
[»] chr4 (4 HSPs)
chr4 (229-301)||(11184942-11185014)
chr4 (131-189)||(11191734-11191793)
chr4 (11-72)||(36794404-36794465)
chr4 (244-324)||(11191840-11191922)
[»] chr3 (1 HSPs)
chr3 (131-183)||(43949057-43949109)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 2348140 - 2348075
Alignment:
Q  7 agagatgaatggcaacagtagacatggccatggatagaggcctcaaacttggtctaaaacaatgga 72  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  2348140 agagatgaatggcaacagtagacatggccatggatagtggcctcaaacttggtttaacacaatgga 2348075  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 2340266 - 2340203
Alignment:
Q  7 agagatgaatggcaacagtagacatggccatggatagaggcctcaaacttggtctaaaacaatg 70  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||    
T  2340266 agagatgaatggcaacagtagacatggcgatggataaaggcctcaaacttggtttaacacaatg 2340203  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 11184942 - 11185014
Alignment:
Q  229 agtataaaaacgagcaaacaaatgaaataaacatgtcaacgtcatgaaatcagtattgccaaatagcagctat 301  Q
    |||||||||||||| |||||| |||||||||||||| ||  | ||||||| ||||| | ||||||||||||||    
T  11184942 agtataaaaacgaggaaacaactgaaataaacatgtgaaatttatgaaataagtatcgtcaaatagcagctat 11185014  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 11191734 - 11191793
Alignment:
Q  131 tctcagaactaaaagataaatcgaacattcaaaggaaacaattac-ttttatttaagaga 189  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||| |||| |||||||||    
T  11191734 tctctgaactaaaagataaaccaaacattcaaaggaaataattacattttttttaagaga 11191793  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 36794404 - 36794465
Alignment:
Q  11 atgaatggcaacagtagacatggccatggatagaggcctcaaacttggtctaaaacaatgga 72  Q
    |||||| || ||||||||||| ||||| ||||| ||||||||||||||  ||| ||||||||    
T  36794404 atgaatagctacagtagacatagccattgatagtggcctcaaacttggcttaacacaatgga 36794465  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 11191840 - 11191922
Alignment:
Q  244 aaacaaatgaaataaacatgtcaacgtcatgaaatcagtattgccaaa----tagcagctatacagcgcagcagaaattggacaa 324  Q
    |||||| |||||||||||||||||| | ||||||| |||| || ||||    ||||||||||||  |||||||||| ||||||||    
T  11191840 aaacaagtgaaataaacatgtcaactttatgaaataagtactgtcaaatatttagcagctatac--cgcagcagaatttggacaa 11191922  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 43949057 - 43949109
Alignment:
Q  131 tctcagaactaaaagataaatcgaacattcaaaggaaacaattacttttattt 183  Q
    |||| |||||| |||||||| | ||||||||||||||||| |||||| |||||    
T  43949057 tctctgaactataagataaacctaacattcaaaggaaacagttacttatattt 43949109  T

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