View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_17 (Length: 383)
Name: NF11455_low_17
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 373
Target Start/End: Original strand, 7973432 - 7973800
Alignment:
| Q |
4 |
ccaattttcatctcatcctaagattttgtctcatttcatttcatagagtttacactctaataatcacttaaaccccaaaatccaattaatttgattcaaa |
103 |
Q |
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||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
7973432 |
ccaatgttcaccccatcctaagattttgtatcatttcatttcatagagtttacactctaataatcacttaaaccc-aaaatccaaataatttgattcaaa |
7973530 |
T |
|
| Q |
104 |
aatgtgcattttagagaagaaaggaaacatcttcatcctaacactaaccggcaacgatgaacaccgtctcaaccccacacttctcaattcaatcaaatcc |
203 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973531 |
aatgtgcagtttagagaagaaaggaaacatcttcatcctaacactaaccggcaacgatgaacaccgtctcaaccccacacttctcaattcaatcaaatcc |
7973630 |
T |
|
| Q |
204 |
gctctccaccgtgtccgtcaacaagccaccacctcctccgtcctcatcaccaccgcacacggcaaattcttctccaacggttacgacatcgactgggcac |
303 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7973631 |
gcccttcaccgtgtccgtcaacaagccaccacctcctccgtcctcatcaccaccgcacacggaaaattcttctccaacggttacgacatcgactgggcac |
7973730 |
T |
|
| Q |
304 |
aagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctct |
373 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7973731 |
aagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctct |
7973800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 23 - 334
Target Start/End: Complemental strand, 7967435 - 7967128
Alignment:
| Q |
23 |
aagattttgtctcatttcatttcatagagt--ttacactctaataatcacttaaaccccaaaatccaattaatttgattcaaaaatgtgcattttagaga |
120 |
Q |
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|||||||||| ||||||||||||||| | ||| ||||| ||||||||||||| | ||||| ||| ||||||| ||||||||||| | || | |
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| T |
7967435 |
aagattttgtatcatttcatttcatatataaattatactctgctaatcacttaaactc--aaatctgattcatttgata-aaaaatgtgcactatacgta |
7967339 |
T |
|
| Q |
121 |
agaaaggaaacatcttcatcctaacactaaccggcaacgatgaacaccgtctcaaccccacacttctcaattcaatcaaatccgctctccaccgtgtccg |
220 |
Q |
| |
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||||||| ||||||||| |||| ||||||| | || || |||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||| |
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| T |
7967338 |
agaaaggcaacatcttcttcctgacactaaac---aatgacgaacactgtctcaaccctacacttctcaattccatcaaatccactctccaccgtgtccg |
7967242 |
T |
|
| Q |
221 |
tcaacaagccaccacctcctccgtcctcatcaccaccgcacacggcaaattcttctccaacggttacgacatcgactgggcacaagacaacaaatcacgc |
320 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| || |||||||| ||||||||| |||||||| ||| |
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| T |
7967241 |
tcaacaagccaccacttcctccgtcctcatcaccatcgcacacgacaaattcttctccaacggctatgacatcgattgggcacaatctaacaaatctcgc |
7967142 |
T |
|
| Q |
321 |
atcatcctcatcga |
334 |
Q |
| |
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||||||||||||| |
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| T |
7967141 |
ttcatcctcatcga |
7967128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 372
Target Start/End: Complemental strand, 55819743 - 55819565
Alignment:
| Q |
194 |
aatcaaatccgctctccaccgtgtccgtcaacaagccaccacctcctccgtcctcatcaccaccgcacacgg-caaattcttctccaacggttacgacat |
292 |
Q |
| |
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|||||||| ||| |||| || ||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||| || | ||| ||||| |
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| T |
55819743 |
aatcaaattcgccctcctccatgtccgtcaacaagccaccacctcctccgccctcatcaccaccacacacgggcagattcttctctaatg-ttatgacat |
55819645 |
T |
|
| Q |
293 |
cgactgggcacaagacaacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctc |
372 |
Q |
| |
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||||||||||||| ||||||| || ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| |
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| T |
55819644 |
cgactgggcacaaaacaacaactctcgcatgatcctcatcgacgatctcctctgtttcatcgtctccgaaattctctctc |
55819565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 209 - 373
Target Start/End: Original strand, 1068647 - 1068811
Alignment:
| Q |
209 |
ccaccgtgtccgtcaacaagccaccacctcctccgtcctcatcaccaccgcacacggcaa-attcttctccaacggttacgacatcgactgggcacaaga |
307 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||| || | | | |||||||| |||||| || | |
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| T |
1068647 |
ccaccatgtccgtcaacaagccaccacctcctccgccctcatcaccaccacacacgggaagattcttctctaatgct-atgacatcgattgggcataaaa |
1068745 |
T |
|
| Q |
308 |
caacaaatcacgcatcatcctcatcgacgatctccttcgttccgtcgtctccgaacttctctctct |
373 |
Q |
| |
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|||||| || ||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
1068746 |
caacaactctcgcatgatcctcatcgacgatctcctccgttccatcgtctccaaacttctctctct |
1068811 |
T |
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