View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_23 (Length: 297)
Name: NF11455_low_23
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 8361966 - 8361721
Alignment:
| Q |
15 |
caaagggaaagaataataaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagt |
114 |
Q |
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| T |
8361966 |
caaagggaaaga---ataaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagt |
8361870 |
T |
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| Q |
115 |
ttgtccaggggtcgtgtcttgtgctgatatcttggctcttgctgctagggacgctgtcactctggtaagtcacaatcacaaatgatgatatgaattttat |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8361869 |
ttgtccaggggtcgtgtcttgtgctgatattttggctcttgctgctagagacgctgtcactctggtaagtcacaatcacaaatgatgatatgaa--ttat |
8361772 |
T |
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| Q |
215 |
gataatttaaaggttacgttgcagtaacaatt---aatacattttttgagtgtcat |
267 |
Q |
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| T |
8361771 |
aataatttaaag-----gttgcagtaacaaataacaatacattttttgagtgtcat |
8361721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 9058670 - 9058591
Alignment:
| Q |
32 |
aaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagc |
111 |
Q |
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| T |
9058670 |
aaagcagaaaaggatggaccgccaaacatttcattgcatgcattctatgtcattgatgaagcaaagaaagcattagaagc |
9058591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 31748067 - 31748206
Alignment:
| Q |
32 |
aaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagtttgtccaggggtcgtgt |
131 |
Q |
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| T |
31748067 |
aaagcagaaaaagatggaccaccaaatgcatctttgcatgcattctttatcattgataatgcaaagaaagcattagaagctgcttgccctggtgtagtct |
31748166 |
T |
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| Q |
132 |
cttgtgctgatatcttggctcttgctgctagggacgctgt |
171 |
Q |
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| T |
31748167 |
cttgtgctgatatcttagcttttgcagcaagggatgctgt |
31748206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 37111313 - 37111348
Alignment:
| Q |
125 |
gtcgtgtcttgtgctgatatcttggctcttgctgct |
160 |
Q |
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| T |
37111313 |
gtcgtgtcttgtgctgatattttggctcttgctgct |
37111348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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