View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11455_low_25 (Length: 284)
Name: NF11455_low_25
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 29821701 - 29821831
Alignment:
| Q |
142 |
tgaatctggagactaatgttattggtacaccatgaactgtatctatcacttgtgtagtattgattaataagtaatattttgagt--tctctccaccatat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29821701 |
tgaatctggagactaatgttattggtacaccatgaactgtatctatcacttgtgtagtattgattaataagtaatattttgagttatctctccaccatat |
29821800 |
T |
|
| Q |
240 |
ccaaagcttcttcctcctccccatgtagctt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29821801 |
ccaaagcttcttcctcctccccatgtagctt |
29821831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 29821521 - 29821610
Alignment:
| Q |
19 |
ttatgtatgctgcttttaacagtgacagtgtttgagacaagataatgtgtaaatggtgcaccatattattgtgtttatagatgaatcagg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29821521 |
ttatgtatgctgcttttaacagtgacagtgtttgagacaagataatgtgtaaatggtgcaccatattattgtgtttatagatgaatcagg |
29821610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University