View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_28 (Length: 250)
Name: NF11455_low_28
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38118770 - 38118535
Alignment:
| Q |
1 |
tggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaacataagtttgcatatgttac |
100 |
Q |
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| T |
38118770 |
tggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaacataagtttgcatatgttac |
38118671 |
T |
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| Q |
101 |
ttttcatgtggtaaataagctgtttgctgaatttcactaattgaatcaaatattttgcaattacgggttactttccatttttcgaacccttaattacaac |
200 |
Q |
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| T |
38118670 |
ttttcatgtggtaaataagctgtttgctgaatttcactaattgaatcaaatattttgcaattacgggttactttccatttttcggacccttaattacaac |
38118571 |
T |
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| Q |
201 |
tatgttgttttatctctgcataaaaagcctgttgcc |
236 |
Q |
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| T |
38118570 |
tatgttgttttatctctgcataaaaagcctgttgcc |
38118535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38129106 - 38129017
Alignment:
| Q |
1 |
tggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaacataagtttg |
90 |
Q |
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| T |
38129106 |
tggacggagtcgtaattgtggcggtgtgattgttgttgaaggtcgtgctaaagacaccattgtgctttcatcaggtagaacagaagtttg |
38129017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 35111348 - 35111425
Alignment:
| Q |
5 |
cggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaaca |
82 |
Q |
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||||||||||| ||| |||||||||||||||| || ||||||||||||||||| |||||||||||| |||||| |||| |
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| T |
35111348 |
cggagtcgtaactctagtggtgtgattgttgtggacggccgtgctaaagacactattgtgctttcaacaggtataaca |
35111425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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