View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11455_low_3 (Length: 674)

Name: NF11455_low_3
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11455_low_3
NF11455_low_3
[»] chr6 (1 HSPs)
chr6 (23-666)||(35212280-35212923)


Alignment Details
Target: chr6 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 23 - 666
Target Start/End: Complemental strand, 35212923 - 35212280
Alignment:
Q  23 caacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtggaagaagagcaagaattgtctgaaaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212923 caacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtggaagaagagcaagaattgtctgaaaatg 35212824  T
Q  123 aaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaatcaagaccatagaaaatgggaagactg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212823 aaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaatcaagaccatagaaaatgggaagactg 35212724  T
Q  223 gcttttggaggatgaagatgttnnnnnnnnnnnnnnnnnnnnttcttcttcttgggagagtggaatgaaagattatagggaggagttacgaggcgaggat 322  Q
    ||||||||| ||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212723 gcttttggaagatgaagatgttagcagcagcagcagcagcagttcttcttcttgggagagtggaatgaaagattatagggaggagttacgaggcgaggat 35212624  T
Q  323 gatgatttcaacaaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgataatgatgatgatatgctttatgaagacc 422  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212623 gatgatttcaacgaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgataatgatgatgatatgctttatgaagacc 35212524  T
Q  423 gtgtttttaactatgcttcttcaaattcggtatgtgcattgtgtgctagtgtttgcttaatacattctctaattagtagtaagtcaattttatataccga 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212523 gtgtttttaactatgcttcttcaaattcggtatgtgcattgtgtgctagtgtttgcttaatacattctctaattagtagtaagtcaattttatataccga 35212424  T
Q  523 aattgtttgtttttacaggctaaatttttgggagtgttgattattataccttgggcaatggattttttggttcatgactatttactcatgccttttttag 622  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212423 aattgtttgtttttacaggctaaatttttgggagtgttgattgttataccttgggcaatggattttttggttcatgactatttactcatgccttttttag 35212324  T
Q  623 acaggtaacctactttcttactcagatcttatatttttcttctc 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35212323 acaggtaacctactttcttactcagatcttatatttttcttctc 35212280  T

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