View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_34 (Length: 241)
Name: NF11455_low_34
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6785623 - 6785399
Alignment:
| Q |
1 |
cacggacattgacacgctatattttttatgcctaaaatttagggaaccgccaaacttgttgaggctggaattgaaagaagaaacagctacgagaatggca |
100 |
Q |
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| T |
6785623 |
cacggacattgacacgctatattttttatccctaaaatttagggaaccgccaaacttgttgaggctggaattgaaagaagaaacagctacgagaatggca |
6785524 |
T |
|
| Q |
101 |
aagacagttcgagcatggattgaaaaatcaacaaggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggttaggttgt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6785523 |
aagacagttcgagcatggattgaaaaatcaataaggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggttaggttgt |
6785424 |
T |
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| Q |
201 |
tggcaatctcttatgtaggaacttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6785423 |
tggcaatctcttatgtaggaacttg |
6785399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6727786 - 6727562
Alignment:
| Q |
1 |
cacggacattgacacgctatattttttatgcctaaaatttagggaaccgccaaacttgttgaggctggaattgaaagaagaaacagctacgagaatggca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6727786 |
cacggatattgacacgctatattttttatgcctaaaatttagggaaccgccaaacttgttaaggctggaattgaaagaagaaacagctacgagaatggca |
6727687 |
T |
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| Q |
101 |
aagacagttcgagcatggattgaaaaatcaacaaggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggttaggttgt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||| |
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| T |
6727686 |
aagacagttcgagcatggattgaaaaatcaataaggtggttgttcgtggtaagcataaagaaagattggcctgtgtttgtgggagttatggctgcgttgt |
6727587 |
T |
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| Q |
201 |
tggcaatctcttatgtaggaacttg |
225 |
Q |
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| | ||||||||||||||||||||| |
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| T |
6727586 |
tcgtaatctcttatgtaggaacttg |
6727562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 6730711 - 6730521
Alignment:
| Q |
35 |
aaatttagggaaccgccaaacttgttgaggctggaattgaaagaagaaacagctacgagaatggcaaagacagttcgagcatggattgaaaaatcaacaa |
134 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || |
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| T |
6730711 |
aaatttagggaaccaccaaacttgttgaggcttgaattgaaagaagaaacaactgtgagaatggcaaagacagttcgagcatggattgaaaaattaataa |
6730612 |
T |
|
| Q |
135 |
ggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggttaggttgttggcaatctcttatgtaggaacttg |
225 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||| |
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| T |
6730611 |
ggtggttgttcgtggtaagcataaagaaagattggcctgtgtttgtgggagttatggctacgttgttcgtaatctcttatgtaggaacttg |
6730521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 6760373 - 6760188
Alignment:
| Q |
35 |
aaatttagggaaccgccaaacttgttgaggctggaattgaaagaagaaacagctacgagaatggcaaagacagttcgagcatggattgaaaaatcaacaa |
134 |
Q |
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|
|||||||||||||| ||||||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||| ||| ||||||| || |
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| T |
6760373 |
aaatttagggaaccaccaaacttgttgaggcttgaattgaaaaaagaaacaactgtgagaatggcaaagacagttcgagcatggactgagaaatcaataa |
6760274 |
T |
|
| Q |
135 |
ggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggttaggttgttggcaatctcttatgtagga |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||| ||||||||| |
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| T |
6760273 |
ggtggttgttcgtggtaagcataaaggaagactggcctgtgtttgtgggagttatggctacgttgttcgtaatctcatatgtagga |
6760188 |
T |
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