View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11455_low_9 (Length: 512)
Name: NF11455_low_9
Description: NF11455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11455_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Original strand, 3641429 - 3641915
Alignment:
| Q |
9 |
aatgagatgaacttaaagaaccgattttagaaatgtcagagtgcaggtagtaaaatcagaaatgtcttgagagaagatatatgtcaacaaactacttaat |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641429 |
aatgacatgaacttaaagaaccgattttagaaatgtcagagtgcaggtagtaaaatcagaaatgtcttgagagaagatatatgtcaacaaactacttaat |
3641528 |
T |
|
| Q |
109 |
tttgacctttcatgtaaaaaagaaatgtatagttaaggtcaagatttactcttcagtccttcaatttcgtacaaaaacagacctcttgatattttcctgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641529 |
tttgacctttcatgtaaaaaagaaatgtatagttaaggtcaagatttactcttcagtccttcaatttcgtacaaaaacagacctcttgatattttcctgt |
3641628 |
T |
|
| Q |
209 |
ttacgtactgtttatcaagtgattgtatgttattctctaagtgattgtgtttatttctgaagtgcattggtttttgttttgcagacttctagctggatca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641629 |
ttacgtactgtttatcaagtgattgtatgttattctctaagtgattgtgtttatttctgaagtgcattggtttttgttttgcagacttctagctggatca |
3641728 |
T |
|
| Q |
309 |
tcaaaagcttatattctggaaatttaattcctttgacggaagaaagcagtacgctttcactccgatctgttcaagtcccagaagttcgaaatgatgttga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641729 |
tcaaaagcttatattctggaaatttaattcctttgacggaagaaaacagtacgctttcactccgatctgttcaagtcccagaagttcgaaatgatgttga |
3641828 |
T |
|
| Q |
409 |
tatgagcgaagaaatataaattttttcaacatcaatgattactatatactgtaaatattagtccacataacagcataatttgcactc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3641829 |
tatgagcgaagaaatataaattttttcaacatcaatgattactatatactgtaaacattagtccacataacagcataatttgcactc |
3641915 |
T |
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