View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11456_low_4 (Length: 403)
Name: NF11456_low_4
Description: NF11456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11456_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 18429811 - 18429423
Alignment:
| Q |
18 |
attctctacaatatcaagaatcgtgatcatgatttaaacctgttgtatgcgcaaa-------tcctactcgatttgagatttcaaacacctacactacgt |
110 |
Q |
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| T |
18429811 |
attctctacaatatcaagaatcgtgatcatgatttaaacctgttgtatgcgcacagcgcatatcctactcgatttgagatttcaaacacctacactacgt |
18429712 |
T |
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| Q |
111 |
ccattcatataatttgtgaaggaaatgtgaggaccagattatatgatctctgcaatgaccagattatatcatcttgaacatttcttga---ccagctaat |
207 |
Q |
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| T |
18429711 |
ccattcatataatttgtgaaggaaatgtgaggaccagattatatgatctctgcaatgaccatattatatcatcttgaacatttcttttaatccagctaat |
18429612 |
T |
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| Q |
208 |
tcttcttcagataagctctctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttccaactataacatctcatcttaaccttgcagccat |
307 |
Q |
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| T |
18429611 |
tcttcttcagataagctctctgcaacgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttcaaactataacatctcatcttaaccttgcagccat |
18429512 |
T |
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| Q |
308 |
aaatccacgatgaaagacttccgatttacacgcatttagtgtaattatcgtcatacttaattttaagtataactatgatgtccatctca |
396 |
Q |
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| T |
18429511 |
aaatccacgatgaaagacttccaatttacacgcatttagtgtaattttcgacatacttaattttaagtattactattatgtccagctca |
18429423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 18402195 - 18402024
Alignment:
| Q |
177 |
tatcatcttgaacatttcttga---ccagctaattcttcttcagataagctctctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaa-ggtt |
272 |
Q |
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| T |
18402195 |
tatcatcttgaacatttcttttaatccagccaattcttcttcagataagctctctgcaatgacctgaaaaacgcaaaggatggtaaaatgaaaaaaggtt |
18402096 |
T |
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| Q |
273 |
ccaactataacatctcatcttaaccttgcagccataaatccacgatgaaagacttccgatttacacgcattt |
344 |
Q |
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| T |
18402095 |
caaactataacatctcatcttaaccttgcagccagaaatccacgatgaaagacttccgatttacacgcattt |
18402024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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