View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11456_low_5 (Length: 303)
Name: NF11456_low_5
Description: NF11456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11456_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 42974189 - 42973894
Alignment:
| Q |
1 |
tacttgttttcttttcctctcccttcagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagtt |
100 |
Q |
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| T |
42974189 |
tacttgttttcttttcccctcccttcagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagtt |
42974090 |
T |
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| Q |
101 |
cagaaggcacttcatgccaatgtaactgggatttcatatgcttggaaggcatgcaggtattttaatttaataaattgatatttagcatgatttgaagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
42974089 |
cagaaggcacttcatgccaatgtaactgggatttcatatgcttggaaggcatgcaggtattttaatttaataaattgaaatttaacatgatttgaagtct |
42973990 |
T |
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| Q |
201 |
ataattctatcatgattttgaattggaaggttttttcttcttcttgacagtggtactgtttgggattactggactgattccccattgtctgtgcttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42973989 |
ataattctatcatgattttgaattggaaggtttttt-ttcttcttgacagtggtactgtttgggattactggactgattccccattgtctatgcttc |
42973894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 42980608 - 42980474
Alignment:
| Q |
26 |
cagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagttcagaaggcacttcatgccaatgtaa |
125 |
Q |
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||||| ||||||| ||||||||||||||| ||| | |||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | |
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| T |
42980608 |
cagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgtgtatttcaatcgtccagaagtgcagaaggcgcttcatgccaatgtta |
42980509 |
T |
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| Q |
126 |
ctgggatttcatatgcttggaaggcatgcaggtat |
160 |
Q |
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| T |
42980508 |
cagggattccatatatttggaagacatgcaggtat |
42980474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 42980385 - 42980329
Alignment:
| Q |
241 |
ttcttgacagtggtactgtttgggattactggactgattccccattgtctgtgcttc |
297 |
Q |
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|||||||||||| || |||| || |||| ||||||||||||||||||||| |||||| |
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| T |
42980385 |
ttcttgacagtgatattgttgggaattattggactgattccccattgtctatgcttc |
42980329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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