View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11456_low_7 (Length: 261)
Name: NF11456_low_7
Description: NF11456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11456_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 42974434 - 42974193
Alignment:
| Q |
17 |
aaacattggctgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatcgatggatat |
116 |
Q |
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| T |
42974434 |
aaacattggctgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatcgatggatat |
42974335 |
T |
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| Q |
117 |
agcattaatacaccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagcctatatgctttcaactcattcacattgctta |
216 |
Q |
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| T |
42974334 |
agcattaatacaccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagcctatatgctttcaactcattcacattgctta |
42974235 |
T |
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| Q |
217 |
caaaaaccataacatatattagaagaagtattttgatgattattt |
261 |
Q |
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| T |
42974234 |
caaaaaccataacatatatta---gaagtgttttgatgattattt |
42974193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 42980850 - 42980692
Alignment:
| Q |
27 |
tgtgattttgggtccattcagcatccatcagtgcaatgtttgcaggctcttactgttgcaattaccgagcaaggaaacatcgatggatatagcattaata |
126 |
Q |
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| T |
42980850 |
tgtgattttggatcatctctgcatccatcagtgcaatgttttcaggctcttagagtagcagttgctgaacaaggaaacattgatccatatagcatttata |
42980751 |
T |
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| Q |
127 |
caccgccttgtaacaataccgcatcactcagaagcggcttgcatgatcgttatgtaagc |
185 |
Q |
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| T |
42980750 |
ctccgccttgtaacaataccgcatcactcagaagtggcttgaacggtcgttatgtaagc |
42980692 |
T |
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