View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_high_10 (Length: 364)
Name: NF11457_high_10
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 41933786 - 41934125
Alignment:
| Q |
8 |
tagcataggtgatctgaaaatgaaaacaggtaccaaaatagtgttgatgatatgggtggcaatgttgttgagtttactagcagaatagtatttatgtcaa |
107 |
Q |
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| T |
41933786 |
tagcctaggtgatctgaaaatgaaaacaggtaccaaaatagtgttgatgatatgggtggcaatgttgttgagtttactagcagaatagtatttatgtcaa |
41933885 |
T |
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| Q |
108 |
agtgttttgtggtgtgacacacaatgttactggttcttcccttaactccaaaa-gacaaggtggatgaaacagtgaacatattttctttgatatagtgag |
206 |
Q |
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| T |
41933886 |
agtgttttgtggtgtgacacacaatgttactggttcttcccttaactccaaaaagacaaggtggatgaaacagtgaacatattttctttgatatagtgag |
41933985 |
T |
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| Q |
207 |
aaagcattagaagaggagacacggactgagtatctgatccaacccgaccagagtgtgcagaccaaagcacttgctggtttaaatgttaactatttgtttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41933986 |
aaagcattagaagaggagacacggactgagtatctgatccaacccgaccagagtgtgcagaccaaagcacttgctggtttaaatgttaactatttgtttc |
41934085 |
T |
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| Q |
307 |
ccgaggttcagaaaagatcaccatgagagggtgtcaaaca |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41934086 |
ccgaggttcagaaaagatcaccatgagagggtgtcaaaca |
41934125 |
T |
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