View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_high_17 (Length: 257)
Name: NF11457_high_17
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_high_17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 18101744 - 18101988
Alignment:
| Q |
15 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
114 |
Q |
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| T |
18101744 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
18101843 |
T |
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| Q |
115 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataatggagtttcgaaacattcgcaagctgca |
212 |
Q |
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| T |
18101844 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
18101943 |
T |
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| Q |
213 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattcct |
257 |
Q |
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| T |
18101944 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattcct |
18101988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 37859352 - 37859596
Alignment:
| Q |
15 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859352 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
37859451 |
T |
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| Q |
115 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacc--agtctcattgccataatggagtttcgaaacattcgcaagctgca |
212 |
Q |
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| T |
37859452 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
37859551 |
T |
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| Q |
213 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattcct |
257 |
Q |
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| T |
37859552 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattcct |
37859596 |
T |
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