View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_high_18 (Length: 245)
Name: NF11457_high_18
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37859603 - 37859828
Alignment:
| Q |
1 |
tgcctccaaacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacattggtaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37859603 |
tgcctccaaacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacatttgtaatca |
37859702 |
T |
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| Q |
101 |
ccgttggaattcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcat |
200 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859703 |
ccgttggaattcctaatcaaaccacc--acgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcat |
37859800 |
T |
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| Q |
201 |
cttccttccaagcaattagcctagtttt |
228 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
37859801 |
cttccttccaagcaattagccgagtttt |
37859828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18101995 - 18102219
Alignment:
| Q |
1 |
tgcctccaaacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacattggtaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18101995 |
tgcctccaaacacattcagatcccttgaatcaaagccatgatctcggcatggaggctaatggaatagccaatattaccgtggaagccacatttgtaatca |
18102094 |
T |
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| Q |
101 |
ccgttggaattcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcat |
200 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102095 |
ccgttggaattcctaatcaaaccacc--acgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcat |
18102192 |
T |
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| Q |
201 |
cttccttccaagcaattagcctagttt |
227 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
18102193 |
cttccttccaagcaattagccgagttt |
18102219 |
T |
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