View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_high_2 (Length: 549)
Name: NF11457_high_2
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 49584180 - 49583667
Alignment:
| Q |
19 |
aatgttcctttctgcaagtgtctctgacacctaccaatcaattgaacatagcaaataataagtatggaagacaaatcaataagtatagatccaatccatg |
118 |
Q |
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| T |
49584180 |
aatgttcctctctgcaagtgtctctgacacctaccaatcaattgaacatagcaa----taagtatggaagacaaatcaataagtatagatccaatccatg |
49584085 |
T |
|
| Q |
119 |
acagtggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtcattacctcaagtaattcattttgaacttcctccggtacattcg |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49584084 |
acaatggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtcattacctcaagtaattcattttgaacttcctccggtacattcg |
49583985 |
T |
|
| Q |
219 |
gcatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttgccttccctacatccacaccatct |
318 |
Q |
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| T |
49583984 |
gtatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttcccttccctacatccacaccatct |
49583885 |
T |
|
| Q |
319 |
ctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583884 |
ctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttc |
49583785 |
T |
|
| Q |
419 |
ccaaatatatataaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgct |
518 |
Q |
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| T |
49583784 |
ccaaatatatataaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgttcatgct |
49583685 |
T |
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| Q |
519 |
cctcatgcatcccaatct |
536 |
Q |
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| T |
49583684 |
cctcatgcatcccaatct |
49583667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 347 - 511
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
| Q |
347 |
ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac |
446 |
Q |
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|||||||||||||||| | | |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||||||||||| |
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| T |
49589153 |
ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat |
49589054 |
T |
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| Q |
447 |
cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt |
511 |
Q |
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|||||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| |||||||||| |
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| T |
49589053 |
tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt |
49588989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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