View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_high_6 (Length: 427)
Name: NF11457_high_6
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 52156497 - 52156902
Alignment:
| Q |
18 |
aatttttcataaacaaatcaaactaagaaaagattgatagatatacatatataacaaaagaaaatgataaagtgaagaggcacctctacataagacaaga |
117 |
Q |
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| T |
52156497 |
aatttttcataaacaaatcaaactaagacaagattgacagatatacatatataacaaaagaaaatgataaagtgaagaggcacctctacataagacaaga |
52156596 |
T |
|
| Q |
118 |
ttgacagatatacaagcatacacacacatgtactctattctaaatccacaaatattgaactatacatagacacacgagctatatagcgcagacacttcag |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52156597 |
ttgacagatatacaagcatacacacacgtgtactctattctaaatccacaaatattgaactatacatagacaaacgagctatatagcgcagacacttcag |
52156696 |
T |
|
| Q |
218 |
atttaaggtgtgtccaagtgtcagactaacagactaacacaagttggactccaacatcaacacaacaccgacacatgtgggttacgtataatcacttcca |
317 |
Q |
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| T |
52156697 |
atttaagttgtgtccaagtgt--------cagactaacacaagttggactccgacatcaacacaacaccgacacatgtgggttacgtataatcacttcca |
52156788 |
T |
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| Q |
318 |
ttttctcaagttattattagcgtctatgtgt-----------ccgtgtctgctgttcatgtctatgtcagtgtttcatggcacaaggtatgagcctttca |
406 |
Q |
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| T |
52156789 |
ttttctcaagttattattagcgtctatgtgtcggtgtcggtaccgtgtctggtgttcatgtctatgtcagtgtttcatggcacaaggtatgagcctttca |
52156888 |
T |
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| Q |
407 |
cgtgacctttgctt |
420 |
Q |
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| T |
52156889 |
cgtgacctttgctt |
52156902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 53191687 - 53191636
Alignment:
| Q |
297 |
ggttacgtataatcacttccattttctcaagttattattagcgtctatgtgt |
348 |
Q |
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| T |
53191687 |
ggttatgtataatcactttcattttctcaaattattattaacgtatatgtgt |
53191636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 6859504 - 6859468
Alignment:
| Q |
297 |
ggttacgtataatcacttccattttctcaagttatta |
333 |
Q |
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| T |
6859504 |
ggttacgtacaatcacttccattttctcaaattatta |
6859468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 35335636 - 35335587
Alignment:
| Q |
306 |
taatcacttccattttctcaagttattattagcgtctatgtgtccgtgtc |
355 |
Q |
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| T |
35335636 |
taatcactttcattttctcaaattattactagtgtctatgtgtcagtgtc |
35335587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 430822 - 430774
Alignment:
| Q |
307 |
aatcacttccattttctcaagttattattagcgtctatgtgtccgtgtc |
355 |
Q |
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||||||||| ||||| ||||||||||| ||| ||||||||||| ||||| |
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| T |
430822 |
aatcacttctattttatcaagttattactagtgtctatgtgtcggtgtc |
430774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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