View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11457_high_9 (Length: 376)

Name: NF11457_high_9
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11457_high_9
NF11457_high_9
[»] chr1 (11 HSPs)
chr1 (27-149)||(15982486-15982608)
chr1 (27-104)||(17050367-17050444)
chr1 (27-104)||(51606914-51606991)
chr1 (22-157)||(38688559-38688694)
chr1 (33-74)||(49420090-49420131)
chr1 (33-74)||(40647602-40647643)
chr1 (20-74)||(44948889-44948943)
chr1 (25-74)||(536736-536784)
chr1 (29-74)||(37825393-37825438)
chr1 (33-74)||(49420956-49420997)
chr1 (33-73)||(46134619-46134659)
[»] chr3 (10 HSPs)
chr3 (27-159)||(52757841-52757973)
chr3 (26-152)||(17026883-17027009)
chr3 (26-85)||(3283125-3283184)
chr3 (244-300)||(17027171-17027227)
chr3 (27-74)||(19691754-19691801)
chr3 (27-74)||(45297549-45297596)
chr3 (24-74)||(17591019-17591069)
chr3 (25-107)||(45807009-45807091)
chr3 (179-209)||(52757795-52757825)
chr3 (26-67)||(36232867-36232908)
[»] chr8 (7 HSPs)
chr8 (54-157)||(195906-196009)
chr8 (54-157)||(310743-310846)
chr8 (26-74)||(40450987-40451035)
chr8 (33-74)||(38660082-38660123)
chr8 (244-288)||(195741-195784)
chr8 (244-288)||(310578-310621)
chr8 (26-74)||(33688222-33688269)
[»] chr5 (4 HSPs)
chr5 (21-99)||(36219619-36219697)
chr5 (25-74)||(6006729-6006778)
chr5 (27-63)||(26711568-26711604)
chr5 (27-63)||(26981305-26981341)
[»] chr4 (5 HSPs)
chr4 (27-156)||(22649598-22649727)
chr4 (26-74)||(36013953-36014001)
chr4 (33-104)||(33046348-33046419)
chr4 (25-74)||(52077100-52077149)
chr4 (26-74)||(41261891-41261939)
[»] chr7 (2 HSPs)
chr7 (34-74)||(31276934-31276974)
chr7 (33-96)||(40740666-40740729)
[»] chr6 (2 HSPs)
chr6 (32-74)||(1462051-1462093)
chr6 (27-63)||(16764925-16764961)
[»] chr2 (1 HSPs)
chr2 (41-74)||(30544741-30544774)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 15982486 - 15982608
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattgt 126  Q
    |||||||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||    
T  15982486 ggtggagtttatcatggcaaaggaaagttgtttcccatgatgggaaaggctaagcatgaccatagatataatagtattatatttcaatgattgagattgt 15982585  T
Q  127 ttacttggtaattgcaatgactt 149  Q
    |||| || |||||| ||||||||    
T  15982586 ttacctgataattgtaatgactt 15982608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 17050444 - 17050367
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagtttt 104  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||| ||||    
T  17050444 ggtggagtttagcttgggaaatgaaagttgtttcccatgatgggaaagttgaagcaggaccatagatatattactttt 17050367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 51606914 - 51606991
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagtttt 104  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||   ||||| |||||||||||||||| ||||    
T  51606914 ggtggagtttagcatgggcaaggaaagttgtttcccatgatgggaaagttgaagcaggaccatagatatattactttt 51606991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 38688694 - 38688559
Alignment:
Q  22 ttgaaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgag 121  Q
    |||| ||||| ||||| |||||||||  |||||||||||||||||||||||||  || ||  |||||| ||||||||  ||||||| |   | | |||||    
T  38688694 ttgatggtggggtttaatatgggaaagaaaagttgtttcccatgatgggaaagtttatgctggaccattgatatattcattttatatttggagggttgag 38688595  T
Q  122 attgtttacttggtaattgcaatgactttttgatgg 157  Q
    |||| |||| || ||| |||||| ||||||||||||    
T  38688594 attgattacctgctaactgcaataactttttgatgg 38688559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 49420090 - 49420131
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  49420090 gtttagtatgggaaaggaaagttgtttcccatgatgggaaag 49420131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 40647602 - 40647643
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  40647602 gtttagtatgggaaatgaaagttgtttcttatgatgggaaag 40647643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 44948943 - 44948889
Alignment:
Q  20 ctttgaaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||| ||||  ||||||||||||||| ||||||| |||||||| |||||||||    
T  44948943 ctttgatggtgaggtttagtatgggaaaggaaagttctttcccataatgggaaag 44948889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 536736 - 536784
Alignment:
Q  25 aaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||||| ||||    
T  536736 aaggtggggtttagtatgggaaaggaaagtt-tttcccatgatggaaaag 536784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 37825438 - 37825393
Alignment:
Q  29 tggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||||| ||| ||||||| | ||||||||||||||||    
T  37825438 tggagtttagtatggaaaaggaaagttttatcccatgatgggaaag 37825393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 49420997 - 49420956
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  49420997 gtttagtatgggaaagggaagttgtttcccatgatggaaaag 49420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 46134659 - 46134619
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaa 73  Q
    ||||||||||||||| | |||||||||||||| ||||||||    
T  46134659 gtttagtatgggaaagggaagttgtttcccatcatgggaaa 46134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 52757973 - 52757841
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattgt 126  Q
    |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| |||||||||||||||| |||| || || |  |||| ||||||||||    
T  52757973 ggtggagtttagcatgggaaatgaaatttgtttttcatgatgggaaaggctaaacatgaccatagatataatagtattttattttaatggttgagattgt 52757874  T
Q  127 ttacttggtaattgcaatgactttttgatggaa 159  Q
    |||  || |||||||||||||||||||||||||    
T  52757873 ttatctgataattgcaatgactttttgatggaa 52757841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 17026883 - 17027009
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattg 125  Q
    ||||||||||||  |||||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||   ||||| |||||||||    
T  17026883 aggtggagtttaacatgggaaaggaaagttgtttcccataatgggaaaggctaaatatgaccatagatatattagttttatatctcaatggttgagattg 17026982  T
Q  126 tttacttggtaattgcaatgacttttt 152  Q
    ||||| | ||||||  | |||||||||    
T  17026983 tttacctagtaattatagtgacttttt 17027009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 3283125 - 3283184
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatga 85  Q
    |||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |||||    
T  3283125 aggtggagtttagtatgggaaatggaagttgttttctatgatgagaaaggctaaacatga 3283184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 17027171 - 17027227
Alignment:
Q  244 ttgttgggggataaaccaagatttaagcctgatcatgtacatatattaaaaccagtg 300  Q
    ||||| ||| |||||||||||||||| ||||||||  ||||||||||||||||||||    
T  17027171 ttgttagggaataaaccaagatttaatcctgatcacatacatatattaaaaccagtg 17027227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 19691801 - 19691754
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||    
T  19691801 ggtggagtttagaatgggaatggaaagttgtttcccatgatgggaaag 19691754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 45297549 - 45297596
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaag 45297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 17591069 - 17591019
Alignment:
Q  24 gaaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||| |||||| ||||||||| ||||||| | ||||||||||||||||    
T  17591069 gaaggtgaagtttaatatgggaaaagaaagttctatcccatgatgggaaag 17591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 45807091 - 45807009
Alignment:
Q  25 aaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttata 107  Q
    ||||||| |||||| ||||||||  |||||||||||| ||||||||||||   | ||| | |||| ||||||||| |||||||    
T  45807091 aaggtggggtttagaatgggaaagcaaagttgtttcctatgatgggaaagttgacgcagggccattgatatattaattttata 45807009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 52757825 - 52757795
Alignment:
Q  179 atgaccccaccaattcattaaataacatttt 209  Q
    |||||||||||||||||||||||||||||||    
T  52757825 atgaccccaccaattcattaaataacatttt 52757795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 36232867 - 36232908
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgat 67  Q
    |||||| ||||||||||||||| ||||||| |||||||||||    
T  36232867 aggtggggtttagtatgggaaaggaaagttctttcccatgat 36232908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 196009 - 195906
Alignment:
Q  54 ttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattgtttacttggtaattgcaatgactttttg 153  Q
    |||||||||||||||  |||| |||||||||||||||||||||||| ||||||| | ||| | || ||||| ||||| || |||||  ||||||||||||    
T  196009 ttgtttcccatgatgaaaaagactaagcatgaccatagatatattaattttatatttcaacggtttagattatttacgtgctaattataatgactttttg 195910  T
Q  154 atgg 157  Q
    ||||    
T  195909 atgg 195906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 310846 - 310743
Alignment:
Q  54 ttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattgtttacttggtaattgcaatgactttttg 153  Q
    |||||||||||||||  |||| |||||||||||||||||||||||| ||||||| | ||| | || ||||| ||||| || |||||  ||||||||||||    
T  310846 ttgtttcccatgatgaaaaagactaagcatgaccatagatatattaattttatatttcaacggtttagattatttacgtgctaattataatgactttttg 310747  T
Q  154 atgg 157  Q
    ||||    
T  310746 atgg 310743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 40451035 - 40450987
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||| ||||||||||||||||| |||||||||||||  |||||||||    
T  40451035 aggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaag 40450987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 38660082 - 38660123
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||||| | |||||||||||| |||||||||||    
T  38660082 gtttagtatgggaaagggaagttgtttcccttgatgggaaag 38660123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 195784 - 195741
Alignment:
Q  244 ttgttgggggataaaccaagatttaagcctgatcatgtacatata 288  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||    
T  195784 ttgttggggaataaaccaagatttaagcct-atcatgaacatata 195741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 310621 - 310578
Alignment:
Q  244 ttgttgggggataaaccaagatttaagcctgatcatgtacatata 288  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||    
T  310621 ttgttggggaataaaccaagatttaagcct-atcatgaacatata 310578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 33688222 - 33688269
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||||||||||||| | |||| ||||||||| |||||||||    
T  33688222 aggtggagtttagtatgggaaagggaagtagtttcccat-atgggaaag 33688269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 36219619 - 36219697
Alignment:
Q  21 tttgaaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatatta 99  Q
    |||| ||||||||||||||||||||||  ||| || ||||||||||||| ||||   ||||| ||||||||||||||||    
T  36219619 tttgcaggtggagtttagtatgggaaagaaaacttctttcccatgatggaaaagttaaagcaggaccatagatatatta 36219697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 6006729 - 6006778
Alignment:
Q  25 aaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||||| |||||||| | || |||||||||||||| ||||||    
T  6006729 aaggtggagtttagcatgggaaagggaacttgtttcccatgataggaaag 6006778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 26711568 - 26711604
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttccca 63  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26711568 ggtggggtttagtatgggaaaggaaagttgtttccca 26711604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 26981305 - 26981341
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttccca 63  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  26981305 ggtggggtttagtatgggaaaggaaagttgtttccca 26981341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 22649727 - 22649598
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagttttatactccaatgattgagattgt 126  Q
    ||||| ||||| |||||||||  || ||||||||||||||||||||||  || ||  |||||| ||||||||  ||||||| |   | | |||||||||     
T  22649727 ggtggggtttaatatgggaaagaaaggttgtttcccatgatgggaaagtttatgctggaccattgatatattcattttatatttggagggttgagattga 22649628  T
Q  127 ttacttggtaattgcaatgactttttgatg 156  Q
    |||| || ||| |||||| |||||||||||    
T  22649627 ttacctgctaactgcaataactttttgatg 22649598  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 36014001 - 36013953
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||||||| |||||||||||||||||||| |||  |||||||||    
T  36014001 aggtggagtttagcatgggaaatgaaagttgtttaccaccatgggaaag 36013953  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 33046348 - 33046419
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatatattagtttt 104  Q
    ||||||||||||||| |||| ||||||||| | |||||||||  || ||| |||| | ||||||||||||||    
T  33046348 gtttagtatgggaaaggaaatttgtttccctttatgggaaagtttatgcaagaccgttgatatattagtttt 33046419  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 52077100 - 52077149
Alignment:
Q  25 aaggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||||  |||||||| || |||| ||||||||||||||||||    
T  52077100 aaggtggagtttaacatgggaaaggagagttatttcccatgatgggaaag 52077149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 41261939 - 41261891
Alignment:
Q  26 aggtggagtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||| |||||||||||||||||| |||||||||| |  |||||||||    
T  41261939 aggtggggtttagtatgggaaatgagagttgtttcctaccatgggaaag 41261891  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 31276934 - 31276974
Alignment:
Q  34 tttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  31276934 tttagtatgggaaaggaaagttctttcccatgatgggaaag 31276974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 40740666 - 40740729
Alignment:
Q  33 gtttagtatgggaaatgaaagttgtttcccatgatgggaaaggctaagcatgaccatagatata 96  Q
    |||||| |||||||| |||| ||||||||||||||||||||  |||  || |||||||||||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaaatctatccaggaccatagatata 40740729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 1462093 - 1462051
Alignment:
Q  32 agtttagtatgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    |||||||||||||||| |||| || ||||||||||||||||||    
T  1462093 agtttagtatgggaaaagaaatttctttcccatgatgggaaag 1462051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 16764925 - 16764961
Alignment:
Q  27 ggtggagtttagtatgggaaatgaaagttgtttccca 63  Q
    |||||||||||| |||||||| |||||||||||||||    
T  16764925 ggtggagtttagcatgggaaaggaaagttgtttccca 16764961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 30544741 - 30544774
Alignment:
Q  41 tgggaaatgaaagttgtttcccatgatgggaaag 74  Q
    ||||||||| ||||||||||||||||||||||||    
T  30544741 tgggaaatggaagttgtttcccatgatgggaaag 30544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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