View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11457_low_1 (Length: 650)

Name: NF11457_low_1
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11457_low_1
NF11457_low_1
[»] chr7 (1 HSPs)
chr7 (17-631)||(45692632-45693266)


Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Original strand, 45692632 - 45693266
Alignment:
Q  17 aataatgtgtgcatttatctacaacttttatctgaaaattgtattgagttccctgtcataacactttgtcaagaacaaacaatacaggtttcaatcttca 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45692632 aataatgtgtgcatttgtctacaacttttatctgaaaattgtattgagttccctgtcataacactttgtcaagaacaaacaatacaggtttcaatcttca 45692731  T
Q  117 tacacttattcacaatgatatttaaagttcctatatattttttagtctaacaaatcagaagttcctttaaatttgttttattaaatactccagcccaaag 216  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45692732 tacact-attcacaatgatatttaaagttcctacatattttttagtctaacaaatcagaagttcctttaaatttgttttattaaatactccagcccaaag 45692830  T
Q  217 tggacaatacttcnnnnnnncggttcagtggacttgaggttggaacataacnnnnnnnntatgcacaaaaacagaaaaggagatatcttcgtacaaactg 316  Q
     ||||||||||||       |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  45692831 cggacaatacttcaaaaaaacggttcagtggacttgaggttggaacataacaaaaaaaatatgcacaaaaacagaaaaggagatatcttcgtacaaactg 45692930  T
Q  317 acctggatcgacatttgatttgttgagctacatcccttgttgtttagcataacttgtgagttcacatttggcattggatc-------------------- 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        
T  45692931 acctggatcgacatttgatttgttgagctacatcccttgttgtttagcataacttgtgagttcacatttggcattggatcctttaacttaggcatttgat 45693030  T
Q  397 -ctttaacttagaggctgaagccgattccacggtttccattagtcctgctgttccactagcatttaattctacagctgatgagttcataacaggctctcc 495  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45693031 cctttaacttagaggctgaagccgattccacggtttccattagtcctgctgttccactagcatttaattctacagctgatgagttcataacaggctctcc 45693130  T
Q  496 gggataagaaaacattgaagcacttggcattggcatgtgcagtccctgaccagcttgaagcccaaacatttgaggatttggtcttgccatcccatgtaaa 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45693131 gggataagaaaacattgaagcacttggcattggcatgtgcagtccctgaccagcttgaagcccaaacatttgaggatttggtcttaccatcccatgtaaa 45693230  T
Q  596 gcagcaagtccagatgtatgtgcaacaggaaggtga 631  Q
    ||||||||||||||||||||||||||||||||||||    
T  45693231 gcagcaagtccagatgtatgtgcaacaggaaggtga 45693266  T

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