View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_low_12 (Length: 358)
Name: NF11457_low_12
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 33553057 - 33552735
Alignment:
| Q |
19 |
gtcataacctctctcaaatagccactagataaactcaaataagtaaatccaaacaaaagctaaatagaagctcaatgtaatgtaaagtaatatggaaata |
118 |
Q |
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| T |
33553057 |
gtcataacctctctcaaatagccactagataaactcaaataa----------acaaacgctaaatagaagctcaatgtaatgtaatgtaatatggaaata |
33552968 |
T |
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| Q |
119 |
atggagataggacattgacttaccttgagcttgagatgaagatgtctgattctcatattgttcaatattgtttgatcaaaacttgaagggaaaattaatt |
218 |
Q |
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| T |
33552967 |
atggagagaggacattgacttaccttgagcttgagatgaagatgtctgattctcatattgttcaatattgtttgatcaaaacatgaagggaaaattaact |
33552868 |
T |
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| Q |
219 |
tatatttgcagaagttgactagaaaagttagtaaaacaagtatcctagatagaaaataagacagaactcaattcatttggtttttggtaatatata---- |
314 |
Q |
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| T |
33552867 |
tatatttgcagaagttgactagaaaagttagtaaaacaagtatcctagatagaaaataagacagaactcaattcatttggtttttggtaatatatatata |
33552768 |
T |
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| Q |
315 |
tatagctgttgagtaaaaaatggattggccttt |
347 |
Q |
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| T |
33552767 |
tatagctgttgagtaaaaaatggattggccttt |
33552735 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 36878721 - 36878693
Alignment:
| Q |
45 |
agataaactcaaataagtaaatccaaaca |
73 |
Q |
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| T |
36878721 |
agataaactcaaataagtaaatccaaaca |
36878693 |
T |
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