View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11457_low_13 (Length: 334)
Name: NF11457_low_13
Description: NF11457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11457_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 1057322 - 1057610
Alignment:
| Q |
11 |
cataggtcaatttctaggtcacaaactatcccaaaaaagcttagctannnnnnnnnattttatattacattgctgacaagaaccttggagaaagaactga |
110 |
Q |
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| T |
1057322 |
cataggtcaatttctaggtcacaaactatcccaaaaaaccttagctattttttt---ttttatattacattgctgacaagaaccttggagaaagaactga |
1057418 |
T |
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| Q |
111 |
aataagatccttgtgacttttgggacccaaagaagtcttgatgggtgggtgcgagttcatgtgataagtggctacctctccactcttttctccttttaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1057419 |
aataagatccttgtgacttttgggacccaaagaagtcttgatgggtgggtgcgagttcatgtgataagtggttacctctccactcttttctccttttaag |
1057518 |
T |
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| Q |
211 |
caatgccacnnnnnnnnnnnnnnnggattctattggaattcagaatggtagaacctatattgaaagttattaagtacaagttattagtgaatgtt |
305 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1057519 |
caatgccac---ttttttttttttggattctattggaattcagaatggtagaacctatattgaaagttattaagtaccagttattagtgaatgtt |
1057610 |
T |
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